Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CUX1	chr1:71186989-71187110	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000226208	TF binding region

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11579908	0.82[EUR][1000 genomes]
rs12023582	0.93[CHB][hapmap]
rs12028563	0.96[ASN][1000 genomes]
rs12041247	1.00[CHB][hapmap]
rs12048245	1.00[CHB][hapmap]
rs12048393	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs12141116	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1335002	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1591386	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17131473	0.93[CHB][hapmap]
rs17131476	0.82[CHB][hapmap]
rs17131485	0.93[CHB][hapmap]
rs17131488	1.00[CHB][hapmap]
rs2068652	0.93[CHB][hapmap]
rs2152126	1.00[CHB][hapmap]
rs2782786	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2782788	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2820513	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs4320734	0.88[EUR][1000 genomes]
rs6685675	0.95[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71184000-71193000	Weak transcription	Aorta	Aorta
2	chr1:71186800-71187400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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