Variant report

Variant	rs2782908
Chromosome Location	chr6:102438979-102438980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1223042	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1223052	0.84[CEU][hapmap]
rs1310715	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.98[MKK][hapmap];0.83[TSI][hapmap]
rs13190892	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13191478	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13191957	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13195038	0.91[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.90[LWK][hapmap];0.84[MEX][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13197158	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13197283	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13199079	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13200524	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13201987	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13203019	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13203156	0.91[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.84[MEX][hapmap];0.81[MKK][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13208276	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs13210850	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13210976	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13211215	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13215171	0.85[ASN][1000 genomes]
rs13216974	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13218403	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1335022	0.91[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.90[LWK][hapmap];0.84[MEX][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1335024	0.90[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.83[MEX][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1335031	0.82[CHB][hapmap]
rs1335033	0.82[CHB][hapmap]
rs2023599	0.82[CHB][hapmap]
rs2399584	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2518148	0.81[CHB][hapmap]
rs2782929	0.84[CHB][hapmap]
rs2852607	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2852608	0.82[CHB][hapmap]
rs35306110	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35697470	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62423079	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62423081	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62423082	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66829771	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67501069	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7738614	0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7749722	0.83[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.84[MEX][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7756449	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap]
rs9485585	0.90[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs9498801	0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs966953	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs995640	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1033919	chr6:102417713-102474539	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2756012	chr6:102428797-102489159	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2782908	SFRS18	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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