Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2050525	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2484697	0.81[EUR][1000 genomes]
rs2784251	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2784253	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2784270	0.81[EUR][1000 genomes]
rs2784271	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2784272	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2784274	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2807859	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2807860	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2807863	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2807864	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2807865	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2807867	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2807869	0.81[EUR][1000 genomes]
rs6680690	0.89[ASN][1000 genomes]
rs7523735	0.89[ASN][1000 genomes]
rs867027	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs945448	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs949839	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs949840	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv1798350	chr1:221020278-221069740	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221064000-221067000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
2	chr1:221064400-221067600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:221065200-221066800	Weak transcription	Right Ventricle	heart
4	chr1:221065200-221067000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
5	chr1:221065400-221066600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:221065400-221067000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:221065600-221066400	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
8	chr1:221065600-221066400	Weak transcription	Pancreas	Pancrea
9	chr1:221065600-221066400	Weak transcription	Spleen	Spleen
10	chr1:221065600-221066600	Weak transcription	Right Atrium	heart
11	chr1:221065600-221067200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
12	chr1:221066200-221066600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
13	chr1:221066200-221067000	Enhancers	Colon Smooth Muscle	Colon
14	chr1:221066200-221067200	Bivalent Enhancer	Brain Substantia Nigra	brain
15	chr1:221066200-221068000	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
16	chr1:221066200-221068000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
17	chr1:221066200-221070000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

Quick Search: