Variant report

Variant	rs2786114
Chromosome Location	chr1:197302717-197302718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1764629	0.84[EUR][1000 genomes]
rs1764800	0.87[EUR][1000 genomes]
rs476390	0.91[EUR][1000 genomes]
rs510135	0.81[EUR][1000 genomes]
rs518149	0.81[EUR][1000 genomes]
rs568757	0.87[EUR][1000 genomes]
rs571106	0.91[EUR][1000 genomes]
rs615647	0.81[EUR][1000 genomes]
rs616675	0.91[EUR][1000 genomes]
rs6678066	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197298200-197304800	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:197299000-197323400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:197299800-197307200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:197302400-197312800	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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