Variant report

Variant	rs2786601
Chromosome Location	chr1:220719267-220719268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220719227..220721697-chr1:220755682..220758368,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1073460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10779408	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10779409	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10779414	0.80[CEU][hapmap]
rs11118563	0.84[EUR][1000 genomes]
rs12048541	0.88[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12408540	0.81[AMR][1000 genomes]
rs12753927	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12758833	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17007855	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17007885	0.88[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1933002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1933008	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2253641	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2378401	0.94[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs2589578	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2589588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2589589	0.82[AMR][1000 genomes]
rs2786604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2786607	1.00[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2786609	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2786613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2786619	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2889928	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2993209	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2994527	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35327085	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35553664	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3737296	0.94[CEU][hapmap];0.91[JPT][hapmap]
rs4011894	1.00[CEU][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4846657	0.94[CEU][hapmap];0.91[JPT][hapmap]
rs6541155	0.94[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs6699189	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6699196	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7514431	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs7532064	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9431262	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220703400-220724400	Weak transcription	Aorta	Aorta
2	chr1:220706000-220723800	Weak transcription	Fetal Brain Male	brain
3	chr1:220716000-220722400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:220718000-220722200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:220718000-220722200	Weak transcription	Brain Angular Gyrus	brain
6	chr1:220718000-220738600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:220718200-220726200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:220718400-220719400	Enhancers	Spleen	Spleen
9	chr1:220718400-220726200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:220718600-220722200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr1:220718600-220724200	Weak transcription	Fetal Heart	heart
12	chr1:220718600-220731200	Weak transcription	Esophagus	oesophagus
13	chr1:220718600-220738600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr1:220718600-220739000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:220718800-220723400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr1:220719000-220719400	Enhancers	H9 Cell Line	embryonic stem cell
17	chr1:220719000-220719400	Enhancers	HUVEC	blood vessel
18	chr1:220719000-220725200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:220719200-220719400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:220719200-220719400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr1:220719200-220719400	Enhancers	Left Ventricle	heart

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