Variant report

Variant	rs2786606
Chromosome Location	chr1:220765422-220765423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10495149	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10746403	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10779412	0.90[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10779413	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10779414	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10863561	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11118567	0.95[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs11118570	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11118573	0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11118576	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118579	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11118584	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11118588	0.86[ASN][1000 genomes]
rs11588721	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs1193032	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12044432	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12126252	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12408540	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12735691	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12737023	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2095669	0.81[EUR][1000 genomes]
rs2152836	0.85[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2244448	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2378400	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2589577	0.82[AMR][1000 genomes]
rs2589581	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2589586	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2589589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2786598	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2786604	0.81[AMR][1000 genomes]
rs2786610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2786617	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2889895	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs35287074	0.80[EUR][1000 genomes]
rs3737297	0.84[YRI][hapmap]
rs3753873	0.84[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.81[EUR][1000 genomes]
rs3753874	0.91[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs3767319	0.85[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs3767320	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.88[TSI][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3767321	0.90[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3767323	0.90[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.83[JPT][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3820347	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3899315	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3905814	0.85[ASN][1000 genomes]
rs4011894	0.84[CEU][hapmap]
rs4120669	0.81[CHB][hapmap]
rs4338357	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4846326	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4846327	0.85[ASN][1000 genomes]
rs4846655	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6541154	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6675368	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6695583	0.84[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.88[TSI][hapmap];0.86[ASN][1000 genomes]
rs7514431	0.84[CEU][hapmap]
rs9430949	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220748200-220769200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:220748400-220767200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:220748400-220773200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:220748600-220769800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:220748800-220770400	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:220749000-220767000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:220749800-220799000	Weak transcription	Aorta	Aorta
8	chr1:220750000-220767000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:220750400-220767000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:220751800-220799000	Weak transcription	Fetal Stomach	stomach
11	chr1:220752400-220772200	Weak transcription	Fetal Brain Male	brain
12	chr1:220752400-220775000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:220752600-220768800	Weak transcription	Esophagus	oesophagus
14	chr1:220752600-220808600	Weak transcription	Left Ventricle	heart
15	chr1:220753200-220766400	Weak transcription	HMEC	breast
16	chr1:220753400-220778400	Weak transcription	NHEK	skin
17	chr1:220753800-220767000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:220756000-220767000	Weak transcription	Brain Germinal Matrix	brain
19	chr1:220756000-220790800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr1:220756600-220767200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr1:220756600-220775000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr1:220758000-220765800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:220761200-220799200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr1:220761600-220767400	Weak transcription	Right Ventricle	heart
25	chr1:220762000-220771600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr1:220762600-220766400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:220762600-220767200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr1:220762600-220767200	Weak transcription	Pancreas	Pancrea
29	chr1:220762600-220768800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr1:220762600-220769000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr1:220762600-220780200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr1:220763000-220767400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr1:220763000-220767400	Weak transcription	Adipose Nuclei	Adipose
34	chr1:220763000-220767400	Weak transcription	HUVEC	blood vessel
35	chr1:220763400-220767800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr1:220763400-220768000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr1:220763800-220766800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr1:220764000-220766600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr1:220764200-220767200	Weak transcription	Fetal Brain Female	brain
40	chr1:220764200-220790200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr1:220764400-220767400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr1:220764400-220779200	Weak transcription	Fetal Heart	heart
43	chr1:220765000-220768600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr1:220765200-220766000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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