Variant report

Variant	rs2786607
Chromosome Location	chr1:220767223-220767224
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1073460	1.00[CEU][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10779408	0.86[EUR][1000 genomes]
rs10779409	0.88[EUR][1000 genomes]
rs12048541	0.87[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs12753927	0.84[EUR][1000 genomes]
rs12758833	0.88[EUR][1000 genomes]
rs17007855	0.84[EUR][1000 genomes]
rs17007885	0.87[CEU][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes]
rs1933002	1.00[CEU][hapmap];0.89[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1933008	0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2253641	1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2378401	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2378402	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2589578	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2589588	1.00[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2786601	1.00[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2786604	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2786609	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2786613	1.00[CEU][hapmap];0.90[JPT][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2786619	1.00[CEU][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2889928	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2993209	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2994527	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35327085	0.84[EUR][1000 genomes]
rs35553664	0.88[EUR][1000 genomes]
rs3737296	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4011894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4846657	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6541155	0.94[CEU][hapmap]
rs6677302	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6699189	0.94[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6699196	0.94[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7514431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7532064	0.83[EUR][1000 genomes]
rs9431262	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220748200-220769200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:220748400-220773200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:220748600-220769800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:220748800-220770400	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:220749800-220799000	Weak transcription	Aorta	Aorta
6	chr1:220751800-220799000	Weak transcription	Fetal Stomach	stomach
7	chr1:220752400-220772200	Weak transcription	Fetal Brain Male	brain
8	chr1:220752400-220775000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:220752600-220768800	Weak transcription	Esophagus	oesophagus
10	chr1:220752600-220808600	Weak transcription	Left Ventricle	heart
11	chr1:220753400-220778400	Weak transcription	NHEK	skin
12	chr1:220756000-220790800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr1:220756600-220775000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr1:220761200-220799200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr1:220761600-220767400	Weak transcription	Right Ventricle	heart
16	chr1:220762000-220771600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr1:220762600-220768800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:220762600-220769000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:220762600-220780200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr1:220763000-220767400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr1:220763000-220767400	Weak transcription	Adipose Nuclei	Adipose
22	chr1:220763000-220767400	Weak transcription	HUVEC	blood vessel
23	chr1:220763400-220767800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr1:220763400-220768000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr1:220764200-220790200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr1:220764400-220767400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:220764400-220779200	Weak transcription	Fetal Heart	heart
28	chr1:220765000-220768600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr1:220766000-220769800	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr1:220766200-220771200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr1:220766600-220769600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr1:220766800-220768200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr1:220767000-220767400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr1:220767000-220767600	Strong transcription	Fetal Muscle Trunk	muscle
35	chr1:220767000-220767800	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr1:220767000-220768200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr1:220767000-220768200	Strong transcription	Brain Germinal Matrix	brain
38	chr1:220767200-220767400	Enhancers	Pancreas	Pancrea
39	chr1:220767200-220767800	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr1:220767200-220768000	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr1:220767200-220768000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr1:220767200-220768800	Strong transcription	Fetal Brain Female	brain

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