Variant report

Variant	rs2786610
Chromosome Location	chr1:220708496-220708497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10495149	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10746403	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]
rs10779409	0.82[AMR][1000 genomes]
rs10779412	0.91[CEU][hapmap];0.96[CHB][hapmap];0.83[JPT][hapmap]
rs10779414	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]
rs10863557	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11118564	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11118565	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11118566	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11118567	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118570	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11118573	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11118576	0.95[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11588721	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12047297	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12048541	0.82[AMR][1000 genomes]
rs12408540	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12737023	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12758833	0.82[AMR][1000 genomes]
rs17007885	0.82[AMR][1000 genomes]
rs1933001	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1933007	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2095669	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2152836	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2244448	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2378400	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2589581	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2589586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2589589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2786598	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2786606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2786617	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2889895	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35287074	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35553664	0.82[AMR][1000 genomes]
rs3737297	1.00[YRI][hapmap]
rs3753873	0.85[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3753874	0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3767319	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3767320	0.95[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs3767321	0.90[CEU][hapmap];0.96[CHB][hapmap];0.83[JPT][hapmap]
rs3767323	0.90[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap]
rs3820347	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3860322	0.80[EUR][1000 genomes]
rs3899315	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4011894	0.84[CEU][hapmap]
rs4120669	0.81[CHB][hapmap]
rs4846326	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4846650	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4846653	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4846655	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs6541154	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6675368	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6695583	0.84[CEU][hapmap];0.95[CHB][hapmap]
rs7514431	0.84[CEU][hapmap]
rs7556280	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9430949	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220703400-220724400	Weak transcription	Aorta	Aorta
2	chr1:220704600-220710000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:220706000-220723800	Weak transcription	Fetal Brain Male	brain
4	chr1:220706200-220708600	Weak transcription	Fetal Heart	heart
5	chr1:220706800-220710400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
6	chr1:220707600-220708800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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