Variant report

Variant	rs2786617
Chromosome Location	chr1:220736328-220736329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10495149	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10746403	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10779412	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap]
rs10779414	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10863557	0.81[EUR][1000 genomes]
rs11118564	0.80[EUR][1000 genomes]
rs11118565	0.82[EUR][1000 genomes]
rs11118566	0.82[EUR][1000 genomes]
rs11118567	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11118570	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11118573	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11118576	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11118579	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11118584	0.81[ASN][1000 genomes]
rs11588721	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1193032	0.86[AFR][1000 genomes]
rs12044432	0.80[ASN][1000 genomes]
rs12047297	0.82[EUR][1000 genomes]
rs12408540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12737023	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1933001	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1933002	0.81[MEX][hapmap]
rs1933007	0.81[EUR][1000 genomes]
rs2095669	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2152836	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2244448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2253641	0.81[MEX][hapmap]
rs2378400	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2589581	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2589583	0.83[ASN][1000 genomes]
rs2589586	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2589589	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2786598	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2786606	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2786610	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2889895	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2889928	0.81[AMR][1000 genomes]
rs35287074	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3737297	1.00[YRI][hapmap]
rs3753873	0.84[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3753874	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs3767319	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs3767320	0.95[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3767321	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap]
rs3767323	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[TSI][hapmap];0.80[ASN][1000 genomes]
rs3820347	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3899315	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4011894	0.84[CEU][hapmap]
rs4120669	0.81[CHB][hapmap]
rs4338357	0.81[ASN][1000 genomes]
rs4846326	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4846653	0.82[EUR][1000 genomes]
rs4846655	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4846657	0.81[MEX][hapmap]
rs6541154	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6675368	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6695583	0.84[CEU][hapmap];1.00[CHB][hapmap];0.88[TSI][hapmap]
rs7514431	0.84[CEU][hapmap]
rs7556280	0.82[EUR][1000 genomes]
rs9430949	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2786617	C1orf115	cis	multi-tissue	Pritchard

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220718000-220738600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:220718600-220738600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:220718600-220739000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:220722600-220738800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:220723200-220738600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:220724400-220743400	Weak transcription	Fetal Brain Male	brain
7	chr1:220724600-220737600	Weak transcription	Fetal Brain Female	brain
8	chr1:220724600-220741600	Weak transcription	Aorta	Aorta
9	chr1:220724800-220738800	Weak transcription	Right Atrium	heart
10	chr1:220727400-220736400	Weak transcription	Brain Germinal Matrix	brain
11	chr1:220727400-220738800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr1:220727800-220738800	Weak transcription	Fetal Heart	heart
13	chr1:220728000-220745200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:220728600-220739000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr1:220729800-220739000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:220730400-220747400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:220733200-220736800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr1:220734200-220738800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr1:220735400-220739800	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr1:220736200-220736400	Enhancers	Colon Smooth Muscle	Colon

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