Variant report

Variant	rs2786619
Chromosome Location	chr1:220724790-220724791
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220722411..220725899-chr1:220728860..220731910,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1073460	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10779408	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10779409	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10779414	0.80[CEU][hapmap]
rs11118563	0.84[EUR][1000 genomes]
rs12048541	0.88[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12753927	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12758833	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17007855	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17007885	0.88[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1933002	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1933008	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2253641	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2378401	0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs2589578	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2589586	0.81[AMR][1000 genomes]
rs2589588	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2786601	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2786604	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2786607	1.00[CEU][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2786609	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2786613	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2889928	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2993209	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2994527	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35327085	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35553664	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3737296	0.94[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs4011894	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4846657	0.94[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs6541155	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6677302	0.80[ASN][1000 genomes]
rs6699189	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6699196	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7514431	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs7532064	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9431262	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220718000-220738600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:220718200-220726200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:220718400-220726200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:220718600-220731200	Weak transcription	Esophagus	oesophagus
5	chr1:220718600-220738600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:220718600-220739000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:220719000-220725200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:220721600-220725200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:220722600-220738800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr1:220723200-220738600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:220723800-220724800	Enhancers	Left Ventricle	heart
12	chr1:220723800-220724800	Enhancers	Right Ventricle	heart
13	chr1:220724200-220724800	Enhancers	Brain Hippocampus Middle	brain
14	chr1:220724200-220726200	Enhancers	Brain Germinal Matrix	brain
15	chr1:220724200-220726800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:220724200-220727800	Enhancers	Fetal Heart	heart
17	chr1:220724400-220724800	Enhancers	Brain Anterior Caudate	brain
18	chr1:220724400-220724800	Enhancers	Fetal Muscle Leg	muscle
19	chr1:220724400-220724800	Enhancers	Right Atrium	heart
20	chr1:220724400-220725000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:220724400-220727400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr1:220724400-220727400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr1:220724400-220743400	Weak transcription	Fetal Brain Male	brain
24	chr1:220724600-220726600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr1:220724600-220726800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr1:220724600-220729000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr1:220724600-220729200	Weak transcription	Adipose Nuclei	Adipose
28	chr1:220724600-220737600	Weak transcription	Fetal Brain Female	brain
29	chr1:220724600-220741600	Weak transcription	Aorta	Aorta

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