Variant report

Variant	rs2787573
Chromosome Location	chr6:101847505-101847506
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10457930	1.00[ASN][1000 genomes]
rs12204255	1.00[ASN][1000 genomes]
rs12208565	1.00[ASN][1000 genomes]
rs1948050	0.82[EUR][1000 genomes]
rs2254178	1.00[ASN][1000 genomes]
rs2518173	0.82[EUR][1000 genomes]
rs2518319	0.82[EUR][1000 genomes]
rs2579929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2629982	0.82[EUR][1000 genomes]
rs2764271	1.00[ASN][1000 genomes]
rs2852497	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2852500	0.97[EUR][1000 genomes]
rs2852502	0.95[EUR][1000 genomes]
rs2852503	0.95[EUR][1000 genomes]
rs2852504	0.97[EUR][1000 genomes]
rs2852505	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2852506	0.97[EUR][1000 genomes]
rs2852507	0.97[EUR][1000 genomes]
rs2852509	0.97[EUR][1000 genomes]
rs2852510	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2852511	0.97[EUR][1000 genomes]
rs2852512	0.97[EUR][1000 genomes]
rs2852513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2852514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs496596	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs503387	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566507	0.81[EUR][1000 genomes]
rs570556	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs579069	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62419629	1.00[ASN][1000 genomes]
rs626262	1.00[ASN][1000 genomes]
rs632956	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs643101	1.00[ASN][1000 genomes]
rs658318	1.00[ASN][1000 genomes]
rs661064	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs662360	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs675259	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs687497	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs697438	1.00[ASN][1000 genomes]
rs72958632	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101842200-101849600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:101842400-101849600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:101846000-101849600	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr6:101846400-101847800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
5	chr6:101846400-101847800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:101846400-101847800	Active TSS	Right Atrium	heart
7	chr6:101846400-101848000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr6:101846400-101848000	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr6:101846400-101848200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr6:101846400-101849200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
11	chr6:101846400-101851600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
12	chr6:101846600-101847600	Active TSS	H9 Cell Line	embryonic stem cell
13	chr6:101846600-101847600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:101846600-101847600	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
15	chr6:101846600-101847800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:101846600-101847800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
17	chr6:101846600-101848000	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
18	chr6:101846600-101848200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
19	chr6:101846600-101848200	Bivalent/Poised TSS	Fetal Brain Female	brain
20	chr6:101846600-101850200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
21	chr6:101846800-101847600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:101846800-101847600	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
23	chr6:101846800-101847600	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:101846800-101847800	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:101846800-101848000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
26	chr6:101846800-101848000	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:101846800-101848600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr6:101846800-101848600	Bivalent/Poised TSS	Brain Angular Gyrus	brain
29	chr6:101847000-101847600	Bivalent Enhancer	Lung	lung
30	chr6:101847000-101847800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:101847000-101848200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:101847000-101848200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
33	chr6:101847000-101848400	Bivalent/Poised TSS	Brain Substantia Nigra	brain
34	chr6:101847200-101847800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:101847200-101848000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
36	chr6:101847200-101848000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
37	chr6:101847200-101848400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:101847200-101849200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:101847400-101847600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
40	chr6:101847400-101847600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:101847400-101847600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
42	chr6:101847400-101847600	Bivalent Enhancer	Fetal Muscle Leg	muscle
43	chr6:101847400-101847600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
44	chr6:101847400-101848200	Bivalent/Poised TSS	NH-A	brain

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