Variant report

Variant	rs2788274
Chromosome Location	chr6:101890395-101890396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12211524	1.00[CHB][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1338165	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs1338166	0.86[EUR][1000 genomes]
rs1465168	0.89[CHB][hapmap];0.86[GIH][hapmap];0.85[MEX][hapmap];0.88[YRI][hapmap]
rs1465169	0.81[MEX][hapmap]
rs1856310	0.88[CEU][hapmap];0.82[TSI][hapmap];0.84[YRI][hapmap];0.87[EUR][1000 genomes]
rs2251408	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2254838	0.85[EUR][1000 genomes]
rs2255005	0.96[CEU][hapmap];0.84[YRI][hapmap];0.90[EUR][1000 genomes]
rs2518157	0.81[MEX][hapmap]
rs2518227	0.81[MEX][hapmap]
rs2518246	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2579924	0.81[MEX][hapmap]
rs2787554	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs2787564	1.00[CHB][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2787565	1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2852525	0.88[CHB][hapmap];0.87[YRI][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2852527	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2852528	0.81[EUR][1000 genomes]
rs2852529	0.88[CEU][hapmap];0.84[YRI][hapmap];0.81[EUR][1000 genomes]
rs997279	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv886459	chr6:101880376-101951502	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886460	chr6:101890395-101951502	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101879200-101892600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:101882800-101893000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:101887400-101891600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:101890000-101890800	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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