The 2.0 version of rSNPBase

Variant report

Variant rs2788990
Chromosome Location chr12:28354412-28354413
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:28344400-28355400 Weak transcription Ovary ovary
2 chr12:28344800-28355400 Weak transcription Left Ventricle heart
3 chr12:28344800-28355400 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr12:28344800-28362400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr12:28344800-28363800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr12:28345000-28355600 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr12:28345000-28362200 Weak transcription Primary B cells from peripheral blood blood
8 chr12:28345000-28368800 Weak transcription Brain Hippocampus Middle brain
9 chr12:28345000-28369600 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr12:28345200-28355400 Weak transcription Brain Anterior Caudate brain
11 chr12:28345200-28355400 Weak transcription Stomach Smooth Muscle stomach
12 chr12:28345400-28359000 Weak transcription Primary T helper cells fromperipheralblood blood
13 chr12:28345400-28370400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
14 chr12:28346000-28355800 Weak transcription Rectal Smooth Muscle rectum
15 chr12:28346000-28362400 Weak transcription Primary T helper cells PMA-I stimulated --
16 chr12:28346000-28369800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
17 chr12:28346200-28355400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
18 chr12:28347800-28358600 Weak transcription Primary B cells from cord blood blood
19 chr12:28347800-28362400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
20 chr12:28347800-28363400 Weak transcription Primary T cells fromperipheralblood blood
21 chr12:28347800-28363800 Weak transcription Fetal Stomach stomach
22 chr12:28347800-28364000 Weak transcription Thymus Thymus
23 chr12:28348000-28355200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr12:28348000-28362000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr12:28348000-28366800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr12:28348000-28367800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr12:28348200-28385400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr12:28348400-28362000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr12:28349600-28355400 Weak transcription Primary T helper naive cells from peripheral blood blood
30 chr12:28349600-28355400 Weak transcription Primary T helper naive cells fromperipheralblood blood
31 chr12:28351200-28355400 Weak transcription Pancreatic Islets Pancreatic Islet
32 chr12:28351200-28358800 Weak transcription Brain Substantia Nigra brain
33 chr12:28352000-28354800 Weak transcription Pancreas Pancrea
34 chr12:28352000-28362400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
35 chr12:28352400-28362400 Weak transcription Fetal Thymus thymus
36 chr12:28353000-28362200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr12:28353200-28354800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr12:28353200-28355200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr12:28353200-28360000 Weak transcription Primary T cells from cord blood blood
40 chr12:28353200-28362600 Weak transcription Primary T regulatory cells fromperipheralblood blood
41 chr12:28354400-28357600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015