Variant report

Variant	rs2789732
Chromosome Location	chr1:216923107-216923108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:216923084..216923982-chr1:217507003..217507840,6	MCF-7	breast:
2	chr1:216922971..216923671-chr1:217505833..217506672,3	MCF-7	breast:
3	chr1:216913983..216915914-chr1:216921531..216923998,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10863269	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11117667	0.89[EUR][1000 genomes]
rs11117668	0.86[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11117669	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12070175	0.94[CEU][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12402813	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12403401	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1339350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17043393	0.90[CHB][hapmap]
rs17043570	0.87[EUR][1000 genomes]
rs17043610	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2789730	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2789733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2820875	0.93[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2820876	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2820878	0.82[ASN][1000 genomes]
rs2999504	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs61318304	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61819764	0.85[EUR][1000 genomes]
rs61819766	0.89[EUR][1000 genomes]
rs61819772	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508694	chr1:216901014-216923883	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216897400-216958600	Weak transcription	Pancreas	Pancrea
2	chr1:216911600-216934200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216914400-216923400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:216921600-216925000	Enhancers	Fetal Heart	heart
5	chr1:216922400-216925400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:216922400-216931400	Weak transcription	Right Atrium	heart
7	chr1:216922600-216923800	Enhancers	Brain Anterior Caudate	brain
8	chr1:216922600-216925400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:216922800-216924600	Enhancers	Brain Substantia Nigra	brain
10	chr1:216923000-216923600	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links