Variant report

Variant	rs2789733
Chromosome Location	chr1:216922364-216922365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:216913983..216915914-chr1:216921531..216923998,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10863269	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11117667	0.89[EUR][1000 genomes]
rs11117668	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11117669	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12070175	0.94[CEU][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12402813	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12403401	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1339350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1339357	0.82[ASN][1000 genomes]
rs17043393	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs17043570	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs17043610	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2789730	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2789732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2820875	0.94[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820876	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820878	0.85[ASN][1000 genomes]
rs2999504	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs61318304	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61819764	0.85[EUR][1000 genomes]
rs61819766	0.89[EUR][1000 genomes]
rs61819772	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508694	chr1:216901014-216923883	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216897400-216958600	Weak transcription	Pancreas	Pancrea
2	chr1:216911600-216934200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216914400-216923400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:216919000-216922800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:216921600-216923000	Enhancers	Fetal Stomach	stomach
6	chr1:216921600-216925000	Enhancers	Fetal Heart	heart
7	chr1:216922000-216922800	Enhancers	Ovary	ovary
8	chr1:216922000-216923000	Enhancers	Fetal Muscle Leg	muscle
9	chr1:216922200-216922400	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links