Variant report

Variant	rs2794437
Chromosome Location	chr10:119070357-119070358
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11812488	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817105	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12098832	1.00[EUR][1000 genomes]
rs2532791	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3026066	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3026074	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs363261	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs363263	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs363269	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs363270	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs363293	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs363302	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs363412	1.00[EUR][1000 genomes]
rs363415	1.00[EUR][1000 genomes]
rs57748965	1.00[EUR][1000 genomes]
rs58435860	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58524185	1.00[EUR][1000 genomes]
rs61093869	1.00[EUR][1000 genomes]
rs7069306	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7071623	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7078973	1.00[EUR][1000 genomes]
rs7083451	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7086562	1.00[EUR][1000 genomes]
rs7088012	1.00[EUR][1000 genomes]
rs73389862	1.00[EUR][1000 genomes]
rs73389865	1.00[EUR][1000 genomes]
rs73389875	1.00[EUR][1000 genomes]
rs73391193	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159161	1.00[EUR][1000 genomes]
rs74159164	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74162303	1.00[EUR][1000 genomes]
rs7919034	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7922754	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9943329	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119041400-119101200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:119041800-119071600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:119043000-119094400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:119044800-119077200	Weak transcription	NHDF-Ad	bronchial
5	chr10:119045000-119070800	Weak transcription	Gastric	stomach
6	chr10:119045000-119081800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:119045400-119071200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:119045600-119078600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:119049200-119070800	Weak transcription	NH-A	brain
10	chr10:119049400-119071200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr10:119049400-119071400	Weak transcription	Aorta	Aorta
12	chr10:119049400-119071400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:119049400-119074000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr10:119049600-119075800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:119049800-119070400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:119049800-119070600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:119049800-119071400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:119049800-119074000	Weak transcription	HepG2	liver
19	chr10:119049800-119081800	Weak transcription	Left Ventricle	heart
20	chr10:119049800-119100600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:119049800-119101400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:119049800-119102400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr10:119050000-119070800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr10:119050000-119071400	Weak transcription	Liver	Liver
25	chr10:119050000-119077000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr10:119050000-119093800	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr10:119050000-119101600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr10:119059600-119071400	Weak transcription	Primary B cells from cord blood	blood
29	chr10:119060200-119081600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:119060200-119093200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr10:119061400-119077200	Weak transcription	Fetal Kidney	kidney
32	chr10:119061800-119071800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:119063800-119071200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr10:119063800-119071400	Weak transcription	Fetal Intestine Small	intestine
35	chr10:119063800-119076000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:119063800-119081800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:119063800-119082000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr10:119063800-119086400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr10:119063800-119092000	Weak transcription	Fetal Stomach	stomach
40	chr10:119063800-119113200	Weak transcription	Fetal Thymus	thymus
41	chr10:119064000-119070400	Weak transcription	Primary B cells from peripheral blood	blood
42	chr10:119064000-119074000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr10:119064200-119077800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:119064200-119085600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr10:119064400-119071000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:119064600-119071200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr10:119064600-119071600	Weak transcription	Fetal Muscle Leg	muscle
48	chr10:119064600-119073600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:119064600-119085200	Weak transcription	GM12878-XiMat	blood
50	chr10:119064600-119086600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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