Variant report

Variant	rs2794633
Chromosome Location	chr9:15874826-15874827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs1081243	0.84[EUR][1000 genomes]
rs1081244	0.81[EUR][1000 genomes]
rs1081246	0.84[EUR][1000 genomes]
rs1081247	0.84[EUR][1000 genomes]
rs10962193	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs10962194	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1169469	1.00[CEU][hapmap];0.85[TSI][hapmap];0.92[EUR][1000 genomes]
rs1169470	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1169471	0.88[EUR][1000 genomes]
rs1169472	0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs1169474	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1169475	0.83[EUR][1000 genomes]
rs1169476	0.84[EUR][1000 genomes]
rs1169481	0.83[EUR][1000 genomes]
rs1177610	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1177611	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1184568	0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs1184912	0.88[ASN][1000 genomes]
rs1184913	0.83[EUR][1000 genomes]
rs1185652	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1186048	0.83[EUR][1000 genomes]
rs11999303	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs12005062	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs12005485	0.81[ASN][1000 genomes]
rs12005521	0.81[ASN][1000 genomes]
rs12685963	0.81[ASN][1000 genomes]
rs1328281	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1328287	1.00[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.92[ASN][1000 genomes]
rs1361607	0.84[EUR][1000 genomes]
rs1536685	0.89[JPT][hapmap]
rs1536686	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1536687	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1578556	0.87[EUR][1000 genomes]
rs1578557	0.87[EUR][1000 genomes]
rs1578558	0.83[GIH][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs1582200	0.87[EUR][1000 genomes]
rs16933544	0.89[JPT][hapmap]
rs16933805	0.89[JPT][hapmap]
rs16933814	0.89[JPT][hapmap]
rs1752777	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1773046	0.90[EUR][1000 genomes]
rs1773062	0.83[EUR][1000 genomes]
rs1815697	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935220	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1935221	0.86[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1954220	0.83[EUR][1000 genomes]
rs2094519	0.88[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2105313	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2105314	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2149230	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2182935	0.80[EUR][1000 genomes]
rs2769714	0.92[EUR][1000 genomes]
rs2769716	0.83[EUR][1000 genomes]
rs2794624	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2794625	0.86[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2794626	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2794627	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2794628	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2794629	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2794632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987045	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2987057	0.80[EUR][1000 genomes]
rs2987058	0.82[ASN][1000 genomes]
rs2987060	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2987061	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2987062	1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.93[ASN][1000 genomes]
rs2987064	0.88[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2987065	0.80[TSI][hapmap]
rs2995024	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2995025	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3008684	0.93[ASN][1000 genomes]
rs3008685	0.93[ASN][1000 genomes]
rs3008691	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3008692	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3008693	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3008695	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3008698	0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6474978	0.85[EUR][1000 genomes]
rs6474979	0.84[EUR][1000 genomes]
rs7028328	0.88[EUR][1000 genomes]
rs7035048	0.89[JPT][hapmap]
rs7039881	0.86[EUR][1000 genomes]
rs7044984	0.89[JPT][hapmap]
rs7388793	0.85[EUR][1000 genomes]
rs770190	0.86[EUR][1000 genomes]
rs770192	0.89[EUR][1000 genomes]
rs770193	0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs770194	0.93[ASW][hapmap];0.87[GIH][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs770195	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs770197	0.87[EUR][1000 genomes]
rs770198	0.85[YRI][hapmap];0.90[EUR][1000 genomes]
rs770199	0.90[EUR][1000 genomes]
rs770200	0.91[EUR][1000 genomes]
rs770201	0.90[EUR][1000 genomes]
rs770202	0.90[EUR][1000 genomes]
rs770203	0.85[EUR][1000 genomes]
rs770204	0.80[ASW][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs770205	1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs770206	0.83[EUR][1000 genomes]
rs770207	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs770209	1.00[CEU][hapmap]
rs770210	1.00[CEU][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes]
rs770212	1.00[CEU][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes]
rs770214	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs770216	1.00[CEU][hapmap]
rs770217	0.88[EUR][1000 genomes]
rs770218	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs770219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7856877	0.90[EUR][1000 genomes]
rs7860354	0.85[EUR][1000 genomes]
rs7860463	0.82[EUR][1000 genomes]
rs7861105	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7861533	0.84[ASN][1000 genomes]
rs7866472	0.89[JPT][hapmap]
rs7866699	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs7867018	0.84[ASN][1000 genomes]
rs7869609	0.89[JPT][hapmap]
rs7870166	0.89[JPT][hapmap]
rs7870244	0.89[JPT][hapmap]
rs809493	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9406546	0.82[EUR][1000 genomes]
rs9407664	0.86[EUR][1000 genomes]
rs9407665	0.85[EUR][1000 genomes]
rs9407668	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv892636	chr9:15794858-15876507	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv613666	chr9:15823667-15875162	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv613667	chr9:15823667-15876507	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1016226	chr9:15841107-15875321	ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1015435	chr9:15841107-15880385	Enhancers ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1032081	chr9:15845902-15878115	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1027790	chr9:15845902-15878841	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv969753	chr9:15873053-15877009	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15857800-15885400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15863600-15878200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:15873800-15875000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr9:15874400-15876600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:15874600-15876600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:15874600-15876800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:15874600-15878400	Weak transcription	HSMMtube	muscle
8	chr9:15874800-15876400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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