Variant report

Variant	rs2796881
Chromosome Location	chr13:51290025-51290026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:51289980-51290073	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr13:51288872-51290272	HL-60	blood:	n/a	n/a
3	POLR2A	chr13:51287589-51290724	HL-60	blood:	n/a	n/a
4	REST	chr13:51289032-51290289	HL-60	blood:	n/a	chr13:51290068-51290078
5	MYC	chr13:51290019-51290130	MCF-7	breast:	n/a	n/a
6	GABPA	chr13:51289024-51290465	HL-60	blood:	n/a	n/a
7	POLR2A	chr13:51289994-51290155	MCF-7	breast:	n/a	n/a
8	SPI1	chr13:51289455-51290167	HL-60	blood:	n/a	n/a
9	GABPA	chr13:51289409-51290039	HL-60	blood:	n/a	n/a

Variant related genes	Relation type
DLEU7	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2761843	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2796882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1037350	chr13:51272518-51447354	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv561643	chr13:51286083-51306330	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51269400-51296800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:51286200-51290600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr13:51287600-51290800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
4	chr13:51287800-51290600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr13:51287800-51292000	Active TSS	Brain Hippocampus Middle	brain
6	chr13:51288400-51290600	Enhancers	Primary B cells from peripheral blood	blood
7	chr13:51288400-51291600	Weak transcription	HepG2	liver
8	chr13:51288600-51290200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr13:51288600-51290400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr13:51288600-51290600	Enhancers	Dnd41	blood
11	chr13:51288600-51291600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:51289000-51290200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr13:51289000-51290600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr13:51289400-51290800	Active TSS	Brain Anterior Caudate	brain
15	chr13:51289600-51290200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
16	chr13:51289600-51290200	Enhancers	HMEC	breast
17	chr13:51289800-51290200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr13:51289800-51290200	Active TSS	Liver	Liver
19	chr13:51289800-51290200	Active TSS	Duodenum Mucosa	Duodenum
20	chr13:51289800-51290200	Active TSS	Placenta	Placenta
21	chr13:51289800-51290400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr13:51289800-51290800	Enhancers	Primary B cells from cord blood	blood
23	chr13:51290000-51290200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr13:51290000-51290200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr13:51290000-51290200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr13:51290000-51290200	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr13:51290000-51290200	Enhancers	Fetal Thymus	thymus
28	chr13:51290000-51290800	Active TSS	Brain Substantia Nigra	brain
29	chr13:51290000-51290800	Enhancers	Thymus	Thymus

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