Variant report

Variant	rs2797229
Chromosome Location	chr1:215818358-215818359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10779657	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1361779	0.82[ASN][1000 genomes]
rs14137	0.91[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];0.88[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs2677111	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2677112	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2677117	0.95[CEU][hapmap]
rs2797224	0.84[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs2797254	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2797386	0.84[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs2797393	0.95[CEU][hapmap];0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2797229	SYT14	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215810600-215820000	Weak transcription	Left Ventricle	heart
2	chr1:215810800-215821800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:215810800-215823000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:215811400-215820600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:215817800-215818600	Enhancers	HepG2	liver
6	chr1:215818000-215818600	Flanking Active TSS	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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