Variant report

Variant	rs2797246
Chromosome Location	chr1:215859895-215859896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11120599	1.00[ASN][1000 genomes]
rs11120616	0.84[CHB][hapmap]
rs12021518	0.82[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs12123457	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs1418693	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1418696	0.84[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2797239	1.00[JPT][hapmap]
rs2797245	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2820680	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820682	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2820695	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs4449992	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs4638090	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs6656366	0.84[CHB][hapmap]
rs6674308	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv873171	chr1:215825167-215925167	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2763680	chr1:215855883-215870683	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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