Variant report

Variant	rs279910
Chromosome Location	chr9:975112-975113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10816147	0.83[ASN][1000 genomes]
rs10816154	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10816155	0.92[ASN][1000 genomes]
rs12336949	0.81[CHB][hapmap];0.87[CHD][hapmap];0.93[JPT][hapmap]
rs166789	0.83[ASN][1000 genomes]
rs279882	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs279886	0.89[ASN][1000 genomes]
rs279891	0.86[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.92[ASN][1000 genomes]
rs279896	0.91[CEU][hapmap]
rs279899	0.91[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap]
rs279911	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs417260	0.83[ASN][1000 genomes]
rs4742604	0.84[CHD][hapmap];0.86[JPT][hapmap]
rs4742608	0.81[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs604973	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025492	chr9:478813-1157169	Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv539897	chr9:478813-1157169	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv429977	chr9:584087-983301	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv613037	chr9:643453-1138368	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv817248	chr9:706283-1457665	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv892010	chr9:841152-1069663	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1034070	chr9:911265-1152351	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	esv2755928	chr9:924525-985979	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv892013	chr9:943611-1047343	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1018926	chr9:965006-1014141	Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv892014	chr9:972476-1032153	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:973000-976200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:973200-976000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
3	chr9:973400-975400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
4	chr9:973600-975200	Weak transcription	Pancreas	Pancrea
5	chr9:974000-976000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
6	chr9:974400-977800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
7	chr9:974600-975200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr9:974800-975400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:974800-975400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
10	chr9:974800-976000	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
11	chr9:974800-976000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr9:975000-975200	Bivalent Enhancer	Lung	lung
13	chr9:975000-975400	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
14	chr9:975000-975400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
15	chr9:975000-975600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:975000-975800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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