Variant report

Variant rs2799523
Chromosome Location chr1:92316682-92316683
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:92296400-92335800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr1:92300800-92329600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:92308200-92317400 Weak transcription Lung lung
4 chr1:92312000-92316800 Weak transcription NH-A brain
5 chr1:92312000-92316800 Weak transcription NHEK skin
6 chr1:92312000-92317000 Weak transcription Gastric stomach
7 chr1:92312000-92329800 Weak transcription Primary T helper naive cells from peripheral blood blood
8 chr1:92312000-92337200 Weak transcription Fetal Intestine Small intestine
9 chr1:92312200-92316800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr1:92312200-92316800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr1:92312200-92317000 Weak transcription Brain Cingulate Gyrus brain
12 chr1:92312200-92317000 Weak transcription Fetal Intestine Large intestine
13 chr1:92312600-92316800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr1:92312600-92319600 Weak transcription Placenta Placenta
15 chr1:92312600-92322200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
16 chr1:92312800-92325600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr1:92313600-92316800 Weak transcription Liver Liver
18 chr1:92313800-92328200 Weak transcription Esophagus oesophagus
19 chr1:92314000-92317000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
20 chr1:92315000-92316800 Weak transcription Pancreas Pancrea
21 chr1:92315000-92329800 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr1:92315200-92330200 Weak transcription Spleen Spleen
23 chr1:92315800-92316800 Enhancers Skeletal Muscle Female skeletal muscle
24 chr1:92315800-92318000 Enhancers Primary Natural Killer cells fromperipheralblood blood
25 chr1:92316000-92317200 Enhancers Colonic Mucosa Colon
26 chr1:92316000-92317600 Enhancers Aorta Aorta
27 chr1:92316000-92318200 Enhancers Left Ventricle heart
28 chr1:92316000-92318200 Enhancers Psoas Muscle Psoas
29 chr1:92316200-92317600 Enhancers Stomach Mucosa stomach
30 chr1:92316400-92316800 Enhancers Primary T cells fromperipheralblood blood
31 chr1:92316400-92316800 Weak transcription Brain Hippocampus Middle brain
32 chr1:92316400-92316800 Enhancers Brain Substantia Nigra brain
33 chr1:92316400-92316800 Enhancers Duodenum Mucosa Duodenum
34 chr1:92316400-92317000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
35 chr1:92316400-92317000 Flanking Active TSS Colon Smooth Muscle Colon
36 chr1:92316400-92317200 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr1:92316400-92317200 Enhancers Small Intestine intestine
38 chr1:92316400-92317400 Transcr. at gene 5' and 3' Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr1:92316400-92317400 Enhancers Fetal Kidney kidney
40 chr1:92316400-92317400 Flanking Active TSS Fetal Lung lung
41 chr1:92316400-92317600 Flanking Active TSS Stomach Smooth Muscle stomach
42 chr1:92316400-92317600 Flanking Active TSS A549 lung
43 chr1:92316400-92317600 Flanking Active TSS NHLF lung
44 chr1:92316400-92317800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
45 chr1:92316400-92318000 Enhancers Brain Inferior Temporal Lobe brain
46 chr1:92316400-92318000 Enhancers Sigmoid Colon Sigmoid Colon
47 chr1:92316600-92316800 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
48 chr1:92316600-92316800 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr1:92316600-92316800 Flanking Active TSS Duodenum Smooth Muscle Duodenum
50 chr1:92316600-92316800 Flanking Active TSS Pancreatic Islets Pancreatic Islet

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