Variant report

Variant	rs2800020
Chromosome Location	chr6:64153301-64153302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64153026..64155421-chr6:64281579..64283450,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112245	Chromatin interaction
ENSG00000266680	Chromatin interaction

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs1010057	0.85[EUR][1000 genomes]
rs1320419	0.85[EUR][1000 genomes]
rs1404779	0.85[EUR][1000 genomes]
rs1464865	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1464866	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1525354	0.85[EUR][1000 genomes]
rs1525355	0.85[EUR][1000 genomes]
rs1525357	0.85[EUR][1000 genomes]
rs1608812	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1619321	0.85[EUR][1000 genomes]
rs1621804	0.85[EUR][1000 genomes]
rs1625205	0.85[EUR][1000 genomes]
rs1628449	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1631333	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1711897	0.85[EUR][1000 genomes]
rs1711898	0.85[EUR][1000 genomes]
rs1711901	0.85[EUR][1000 genomes]
rs1711902	0.85[EUR][1000 genomes]
rs1711903	0.89[EUR][1000 genomes]
rs1711904	0.85[EUR][1000 genomes]
rs1711906	0.85[EUR][1000 genomes]
rs1711912	0.85[EUR][1000 genomes]
rs1711913	0.85[EUR][1000 genomes]
rs1711914	0.85[EUR][1000 genomes]
rs1711915	0.85[EUR][1000 genomes]
rs1711918	0.85[EUR][1000 genomes]
rs1711919	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1711927	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1711928	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1723497	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1723498	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1723499	0.85[EUR][1000 genomes]
rs1723500	0.85[EUR][1000 genomes]
rs1723503	0.85[EUR][1000 genomes]
rs1723504	0.81[EUR][1000 genomes]
rs1723508	0.81[EUR][1000 genomes]
rs1723531	0.85[EUR][1000 genomes]
rs1741780	0.85[EUR][1000 genomes]
rs1741782	0.81[EUR][1000 genomes]
rs1741783	0.85[EUR][1000 genomes]
rs1741786	0.85[EUR][1000 genomes]
rs1741787	0.85[EUR][1000 genomes]
rs1741788	0.85[EUR][1000 genomes]
rs1741789	0.85[EUR][1000 genomes]
rs1741790	0.85[EUR][1000 genomes]
rs1741799	0.81[EUR][1000 genomes]
rs1741802	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1741805	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1741810	0.85[EUR][1000 genomes]
rs1741813	0.85[EUR][1000 genomes]
rs1779745	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1779749	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1779753	0.85[EUR][1000 genomes]
rs1779755	0.85[EUR][1000 genomes]
rs1779756	0.85[EUR][1000 genomes]
rs1779757	0.85[EUR][1000 genomes]
rs1779758	0.85[EUR][1000 genomes]
rs1779760	0.85[EUR][1000 genomes]
rs1857565	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1936532	0.85[EUR][1000 genomes]
rs2005098	0.85[EUR][1000 genomes]
rs2474908	0.85[EUR][1000 genomes]
rs2622291	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2622306	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622308	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677021	0.81[EUR][1000 genomes]
rs2677022	0.85[EUR][1000 genomes]
rs2677023	0.85[EUR][1000 genomes]
rs2677026	0.85[EUR][1000 genomes]
rs2677027	0.85[EUR][1000 genomes]
rs2677028	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2677029	0.85[EUR][1000 genomes]
rs2753064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753065	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753069	0.85[EUR][1000 genomes]
rs2753070	0.85[EUR][1000 genomes]
rs2753071	0.85[EUR][1000 genomes]
rs2753072	0.85[EUR][1000 genomes]
rs2753073	0.85[EUR][1000 genomes]
rs2753074	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2800019	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2800021	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2800024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2800025	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2800029	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2800031	0.85[EUR][1000 genomes]
rs2800034	0.85[EUR][1000 genomes]
rs2800035	0.85[EUR][1000 genomes]
rs2800036	0.85[EUR][1000 genomes]
rs4710426	0.85[EUR][1000 genomes]
rs6454169	0.85[EUR][1000 genomes]
rs6933112	0.85[EUR][1000 genomes]
rs732948	0.85[EUR][1000 genomes]
rs7381742	0.81[EUR][1000 genomes]
rs7382020	0.85[EUR][1000 genomes]
rs7750785	0.85[EUR][1000 genomes]
rs7752941	0.85[EUR][1000 genomes]
rs7757686	0.85[EUR][1000 genomes]
rs7758841	0.85[EUR][1000 genomes]
rs7771677	0.85[EUR][1000 genomes]
rs7771703	0.84[EUR][1000 genomes]
rs824373	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs824374	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs824375	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs824376	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs824377	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs824378	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs824379	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs824380	0.85[EUR][1000 genomes]
rs824381	0.85[EUR][1000 genomes]
rs824383	0.85[EUR][1000 genomes]
rs824385	0.85[EUR][1000 genomes]
rs824387	0.85[EUR][1000 genomes]
rs824388	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs824390	0.85[EUR][1000 genomes]
rs824391	0.85[EUR][1000 genomes]
rs824392	0.85[EUR][1000 genomes]
rs824393	0.85[EUR][1000 genomes]
rs824394	0.85[EUR][1000 genomes]
rs850830	0.84[ASN][1000 genomes]
rs860349	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs861113	0.85[EUR][1000 genomes]
rs865415	0.85[EUR][1000 genomes]
rs865416	0.85[EUR][1000 genomes]
rs940741	0.85[EUR][1000 genomes]
rs9767041	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64146600-64158000	Weak transcription	Hela-S3	cervix
2	chr6:64152200-64157200	Weak transcription	Liver	Liver
3	chr6:64152800-64153400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr6:64152800-64153600	Strong transcription	A549	lung
5	chr6:64153000-64153600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:64153000-64154600	Weak transcription	HepG2	liver
7	chr6:64153200-64153600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell

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