Variant report

Variant	rs2800033
Chromosome Location	chr6:64100681-64100682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1010057	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1320419	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1404779	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1525355	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1525357	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1525361	0.92[ASN][1000 genomes]
rs1711906	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1711918	1.00[ASN][1000 genomes]
rs1723499	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1723500	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1723503	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1723527	0.92[ASN][1000 genomes]
rs1723528	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1741810	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1741813	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2005098	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2677026	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2677027	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2677029	0.89[AFR][1000 genomes]
rs2753071	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2753072	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2753073	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2800031	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2800034	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2800035	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56212786	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs58623141	0.81[EUR][1000 genomes]
rs732948	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7750785	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7767012	0.91[AFR][1000 genomes]
rs824380	1.00[ASN][1000 genomes]
rs824381	0.88[ASN][1000 genomes]
rs824390	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs824391	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs824392	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs824393	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs824394	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs861113	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs865415	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs865416	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs940741	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9767041	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1031548	chr6:64026862-64102045	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1030651	chr6:64028392-64102045	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64076400-64113600	Weak transcription	Placenta	Placenta
2	chr6:64094400-64101400	Weak transcription	A549	lung
3	chr6:64095600-64100800	Weak transcription	Liver	Liver
4	chr6:64098200-64101200	Enhancers	HepG2	liver
5	chr6:64098800-64102600	Enhancers	Fetal Intestine Large	intestine
6	chr6:64100000-64102000	Enhancers	Fetal Intestine Small	intestine

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