Variant report

Variant	rs280006
Chromosome Location	chr15:77009315-77009316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs11072617	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1607016	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs166793	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16968310	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968311	1.00[ASN][1000 genomes]
rs16968316	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968319	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968335	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968336	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968364	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968467	0.85[EUR][1000 genomes]
rs17462564	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1838051	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280025	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs280036	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28573845	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28591605	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28605733	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28721404	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28808106	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28886726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55691654	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55903433	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56116678	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56381843	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58265327	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58908956	0.93[EUR][1000 genomes]
rs59195449	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59570104	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59897136	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60963081	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026890	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026892	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026893	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026896	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026900	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026901	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026902	0.95[EUR][1000 genomes]
rs62026904	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026906	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028170	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028171	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028172	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028173	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028174	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028175	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028176	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028177	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028178	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028179	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028180	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028193	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028436	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028437	1.00[ASN][1000 genomes]
rs62028439	1.00[ASN][1000 genomes]
rs62028724	0.92[EUR][1000 genomes]
rs62028726	0.92[EUR][1000 genomes]
rs62028727	0.88[EUR][1000 genomes]
rs62028729	0.88[EUR][1000 genomes]
rs62028730	0.88[EUR][1000 genomes]
rs62028733	0.88[EUR][1000 genomes]
rs62028734	0.85[EUR][1000 genomes]
rs62028735	0.85[EUR][1000 genomes]
rs62028737	0.85[EUR][1000 genomes]
rs62028743	0.82[EUR][1000 genomes]
rs62030360	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030361	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030370	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030371	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030372	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030373	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030374	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030411	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030412	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030415	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030416	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030417	1.00[ASN][1000 genomes]
rs62030424	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030427	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495214	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs731731	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74024121	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74024154	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8023896	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8034637	0.88[EUR][1000 genomes]
rs8038119	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038984	0.90[EUR][1000 genomes]
rs8039601	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041308	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042889	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8043385	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1053924	chr15:76803849-77089079	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904401	chr15:76816015-77085283	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1042089	chr15:76855098-77016127	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1039269	chr15:76863437-77057021	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
9	nsv904404	chr15:76869929-77033934	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
10	nsv904405	chr15:76869929-77047915	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
11	nsv904406	chr15:76869929-77085283	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
12	nsv904407	chr15:76869929-77121196	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
13	nsv904408	chr15:76884127-77085283	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv1046858	chr15:76892097-77020971	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv542440	chr15:76892097-77020971	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1043066	chr15:76892097-77057021	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv542441	chr15:76892097-77057021	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
19	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
20	nsv904409	chr15:76893186-77033934	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv904410	chr15:76893186-77047915	ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv904411	chr15:76893186-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv904412	chr15:76910031-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
24	nsv457206	chr15:76971456-77121196	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
25	nsv570110	chr15:76971456-77121196	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76989600-77055800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr15:76990200-77025200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:76990400-77019000	Weak transcription	Fetal Kidney	kidney
4	chr15:76991000-77020400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:76992400-77056200	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:76992400-77056200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:76992600-77017200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:76992800-77017200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr15:76992800-77056000	Weak transcription	Right Ventricle	heart
10	chr15:76993000-77010200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:76993000-77017600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr15:76993000-77017800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr15:76993000-77020200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:76993000-77024800	Weak transcription	Gastric	stomach
15	chr15:76993000-77024800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr15:76993000-77024800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr15:76993000-77025000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:76993000-77025000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr15:76993200-77020200	Weak transcription	Brain Hippocampus Middle	brain
20	chr15:76993200-77056200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:76994200-77056000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:76994800-77019000	Weak transcription	Placenta	Placenta
23	chr15:76994800-77020000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr15:76995800-77020400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr15:76996000-77017600	Weak transcription	Primary B cells from cord blood	blood
26	chr15:76996000-77025000	Weak transcription	Left Ventricle	heart
27	chr15:77006200-77011400	Weak transcription	Psoas Muscle	Psoas
28	chr15:77006400-77011600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:77007000-77017200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr15:77007000-77020200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr15:77007000-77025000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:77007600-77010000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr15:77007600-77029800	Weak transcription	Brain Angular Gyrus	brain
34	chr15:77007800-77017200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:77008000-77010400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
36	chr15:77008200-77009400	ZNF genes & repeats	Fetal Lung	lung
37	chr15:77008200-77019400	Weak transcription	Fetal Thymus	thymus
38	chr15:77008200-77020600	Weak transcription	Aorta	Aorta
39	chr15:77008200-77025200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr15:77008400-77014200	Weak transcription	Spleen	Spleen
41	chr15:77008600-77011200	Weak transcription	Lung	lung
42	chr15:77008600-77017200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr15:77008600-77020600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr15:77008600-77020600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr15:77008600-77024800	Weak transcription	Pancreas	Pancrea
46	chr15:77008600-77025200	Weak transcription	Esophagus	oesophagus
47	chr15:77008600-77030000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr15:77008800-77010600	Weak transcription	Fetal Intestine Small	intestine
49	chr15:77008800-77011400	Weak transcription	Brain Germinal Matrix	brain
50	chr15:77008800-77017200	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links