Variant report

Variant	rs280022
Chromosome Location	chr15:76956405-76956406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1020280	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1499019	0.95[YRI][hapmap];0.92[AFR][1000 genomes]
rs1499020	0.95[YRI][hapmap];0.92[AFR][1000 genomes]
rs157764	0.84[YRI][hapmap]
rs157770	0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs157771	0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs157772	0.85[YRI][hapmap];0.85[AFR][1000 genomes]
rs157773	0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs157793	0.84[YRI][hapmap]
rs1846437	0.80[AFR][1000 genomes]
rs1867196	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs2015132	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2120112	0.90[YRI][hapmap]
rs2404735	0.95[YRI][hapmap];0.92[AFR][1000 genomes]
rs2439983	0.94[AFR][1000 genomes]
rs2454452	0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2468117	0.85[YRI][hapmap];0.88[AFR][1000 genomes]
rs2469240	0.88[AFR][1000 genomes]
rs2469243	0.86[AFR][1000 genomes]
rs2469245	0.84[AFR][1000 genomes]
rs2585728	0.95[YRI][hapmap];0.96[AFR][1000 genomes]
rs279991	0.96[AFR][1000 genomes]
rs279994	0.96[AFR][1000 genomes]
rs279996	1.00[AMR][1000 genomes]
rs280016	0.83[AFR][1000 genomes]
rs280017	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs280019	0.95[YRI][hapmap];0.96[AFR][1000 genomes]
rs280021	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs280027	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs280031	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs280034	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs280035	0.85[AFR][1000 genomes]
rs2930684	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3099145	1.00[AMR][1000 genomes]
rs3102707	0.89[YRI][hapmap]
rs3102711	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs3102715	1.00[AMR][1000 genomes]
rs3110377	1.00[YRI][hapmap]
rs3110380	1.00[AMR][1000 genomes]
rs3110386	1.00[YRI][hapmap]
rs415439	0.87[AFR][1000 genomes]
rs560598	0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs598011	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1053924	chr15:76803849-77089079	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv471254	chr15:76811390-76978139	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv570021	chr15:76813920-76978139	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv570022	chr15:76816015-76978139	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv904401	chr15:76816015-77085283	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1042089	chr15:76855098-77016127	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
10	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1042623	chr15:76863437-76999030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1039269	chr15:76863437-77057021	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
13	nsv904404	chr15:76869929-77033934	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
14	nsv904405	chr15:76869929-77047915	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
15	nsv904406	chr15:76869929-77085283	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
16	nsv904407	chr15:76869929-77121196	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
17	nsv1052133	chr15:76878362-76962756	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
18	nsv570023	chr15:76884127-76978139	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv904408	chr15:76884127-77085283	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv1046858	chr15:76892097-77020971	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv542440	chr15:76892097-77020971	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv1043066	chr15:76892097-77057021	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv542441	chr15:76892097-77057021	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
24	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
25	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
26	nsv904409	chr15:76893186-77033934	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
27	nsv904410	chr15:76893186-77047915	ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
28	nsv904411	chr15:76893186-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
29	nsv570109	chr15:76907376-76978139	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
30	nsv904412	chr15:76910031-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
31	nsv904413	chr15:76923917-76995150	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76882200-76991400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:76898400-76981000	Weak transcription	Pancreas	Pancrea
3	chr15:76902600-76992000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:76910000-76964200	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:76910200-76959400	Weak transcription	Brain Substantia Nigra	brain
6	chr15:76911400-76990800	Weak transcription	Placenta	Placenta
7	chr15:76926200-76962000	Weak transcription	Gastric	stomach
8	chr15:76926600-76974600	Weak transcription	Esophagus	oesophagus
9	chr15:76929200-76959200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr15:76933200-76974800	Weak transcription	Thymus	Thymus
11	chr15:76933800-76961800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr15:76936600-76991800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr15:76937400-76958000	Weak transcription	Fetal Lung	lung
14	chr15:76938800-76959000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr15:76939000-76967800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:76940000-76970800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr15:76940200-76960400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:76940200-76991800	Weak transcription	Left Ventricle	heart
19	chr15:76941400-76959000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr15:76941400-76991600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr15:76941800-76956600	Weak transcription	Aorta	Aorta
22	chr15:76941800-76956800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr15:76941800-76974200	Weak transcription	Fetal Stomach	stomach
24	chr15:76941800-76976200	Weak transcription	Fetal Muscle Leg	muscle
25	chr15:76942400-76991800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr15:76944400-76960400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr15:76944600-76973800	Weak transcription	Fetal Intestine Small	intestine
28	chr15:76946400-76959000	Weak transcription	Brain Anterior Caudate	brain
29	chr15:76946400-76961800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr15:76947400-76959200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr15:76947400-76959400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:76947400-76962000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr15:76947400-76991600	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr15:76947400-76991600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr15:76947600-76957200	Weak transcription	Dnd41	blood
36	chr15:76947600-76962000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr15:76948000-76958800	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr15:76948200-76971000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr15:76948400-76958200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:76948600-76958800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr15:76952000-76974600	Weak transcription	Right Ventricle	heart
42	chr15:76952600-76957200	Weak transcription	Fetal Brain Female	brain
43	chr15:76952600-76958200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr15:76952600-76958800	Weak transcription	Primary B cells from peripheral blood	blood
45	chr15:76952600-76960000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr15:76952800-76964200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr15:76952800-76972200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr15:76952800-76972800	Weak transcription	Primary B cells from cord blood	blood
49	chr15:76954200-76992000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr15:76954600-76956800	Weak transcription	Liver	Liver

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