Variant report

Variant	rs2800234
Chromosome Location	chr1:225049934-225049935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:225044560..225047473-chr1:225049802..225052064,2	K562	blood:
2	chr1:225041281..225043818-chr1:225048183..225050379,2	K562	blood:
3	chr1:225046184..225050488-chr1:225056479..225059457,3	K562	blood:

rs_ID	r²[population]
rs10495228	0.83[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs10495229	0.86[JPT][hapmap]
rs12561993	0.86[JPT][hapmap]
rs12563857	0.86[JPT][hapmap]
rs12564683	0.83[ASN][1000 genomes]
rs12565019	0.82[ASN][1000 genomes]
rs12565439	0.85[JPT][hapmap]
rs12566857	0.86[JPT][hapmap]
rs12567091	0.86[JPT][hapmap]
rs12567461	0.82[ASN][1000 genomes]
rs12567470	0.82[ASN][1000 genomes]
rs12567499	0.85[JPT][hapmap]
rs1316512	0.82[ASN][1000 genomes]
rs1361923	0.83[ASN][1000 genomes]
rs1482279	0.86[JPT][hapmap]
rs1482280	0.85[JPT][hapmap]
rs1506070	0.86[JPT][hapmap]
rs1600865	0.83[ASN][1000 genomes]
rs16856396	0.99[ASN][1000 genomes]
rs16856435	0.99[ASN][1000 genomes]
rs16856463	0.99[ASN][1000 genomes]
rs16856829	0.91[ASN][1000 genomes]
rs16857787	0.82[ASN][1000 genomes]
rs16858145	0.82[ASN][1000 genomes]
rs16858216	0.82[ASN][1000 genomes]
rs16858299	0.83[ASN][1000 genomes]
rs16858661	0.86[JPT][hapmap]
rs16858758	0.86[JPT][hapmap]
rs16858829	0.86[JPT][hapmap]
rs16858831	0.85[JPT][hapmap]
rs16858932	0.85[JPT][hapmap]
rs1806563	0.98[ASN][1000 genomes]
rs1892121	0.83[ASN][1000 genomes]
rs1905114	0.85[JPT][hapmap]
rs1936629	0.83[ASN][1000 genomes]
rs1936632	0.83[ASN][1000 genomes]
rs1961688	0.85[JPT][hapmap]
rs1982707	0.86[JPT][hapmap]
rs2101143	0.82[ASN][1000 genomes]
rs2252950	0.84[ASN][1000 genomes]
rs2291227	0.81[JPT][hapmap]
rs2298257	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2406098	0.82[ASN][1000 genomes]
rs2449259	0.86[JPT][hapmap]
rs2449273	0.86[JPT][hapmap]
rs2449274	0.86[JPT][hapmap]
rs2449276	0.86[JPT][hapmap]
rs2449292	0.86[JPT][hapmap]
rs2449311	0.86[JPT][hapmap]
rs2449316	0.80[ASN][1000 genomes]
rs2456335	0.86[JPT][hapmap]
rs2456339	0.86[JPT][hapmap]
rs2456340	0.86[JPT][hapmap]
rs2489310	0.83[ASN][1000 genomes]
rs2489322	0.86[JPT][hapmap]
rs2501061	0.85[JPT][hapmap]
rs2501064	0.86[JPT][hapmap]
rs2501066	0.86[JPT][hapmap]
rs2501072	0.86[JPT][hapmap]
rs2501078	0.91[JPT][hapmap]
rs2501081	0.82[ASN][1000 genomes]
rs2501114	0.86[JPT][hapmap]
rs2501129	0.86[JPT][hapmap]
rs2501130	0.86[JPT][hapmap]
rs2501135	0.85[JPT][hapmap]
rs2501141	0.86[JPT][hapmap]
rs2501156	0.86[JPT][hapmap]
rs2662929	0.82[ASN][1000 genomes]
rs2802552	0.86[JPT][hapmap]
rs2802568	0.84[AMR][1000 genomes]
rs2802732	0.84[AMR][1000 genomes]
rs2802733	0.83[AMR][1000 genomes]
rs3012182	0.90[CEU][hapmap];0.86[JPT][hapmap];0.87[TSI][hapmap]
rs4379650	0.80[ASN][1000 genomes]
rs4587536	0.90[ASN][1000 genomes]
rs55635719	0.91[ASN][1000 genomes]
rs55752315	0.91[ASN][1000 genomes]
rs55754430	0.82[ASN][1000 genomes]
rs56203783	0.80[ASN][1000 genomes]
rs56237431	0.99[ASN][1000 genomes]
rs61466304	0.82[ASN][1000 genomes]
rs61540517	0.99[ASN][1000 genomes]
rs6697156	0.86[JPT][hapmap]
rs729398	0.82[ASN][1000 genomes]
rs7531542	0.86[JPT][hapmap]

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225049200-225051200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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