Variant report

Variant	rs2800602
Chromosome Location	chr9:15111107-15111108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10125248	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10481555	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10756651	0.83[AFR][1000 genomes]
rs10810349	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12003018	1.00[AMR][1000 genomes]
rs12003600	1.00[AMR][1000 genomes]
rs1746334	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1746335	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1746336	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1746337	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1780151	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2154152	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2186026	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2761105	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2761116	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2761118	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2761120	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2761122	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2761123	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2761124	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2761125	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2761126	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2800596	0.90[AFR][1000 genomes]
rs2800598	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2800600	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2800601	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2985032	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2985033	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2985034	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2996633	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2996634	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4323567	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4481708	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4507866	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4526462	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4548273	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56108794	1.00[AMR][1000 genomes]
rs563302	1.00[AMR][1000 genomes]
rs56920820	1.00[AMR][1000 genomes]
rs57043384	1.00[AMR][1000 genomes]
rs57232665	1.00[AMR][1000 genomes]
rs58206501	1.00[AMR][1000 genomes]
rs59429561	1.00[AMR][1000 genomes]
rs59503078	1.00[AMR][1000 genomes]
rs60302774	1.00[AMR][1000 genomes]
rs61654094	1.00[AMR][1000 genomes]
rs6474896	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7018941	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7028472	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7032041	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7032396	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7041016	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7041258	0.96[AFR][1000 genomes]
rs73646014	1.00[AMR][1000 genomes]
rs7853803	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9406494	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv892623	chr9:15079847-15127129	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15105200-15114600	Weak transcription	Thymus	Thymus
2	chr9:15106200-15115000	Weak transcription	Fetal Thymus	thymus
3	chr9:15108200-15115800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:15110400-15111400	Enhancers	Fetal Stomach	stomach
5	chr9:15111000-15115600	Weak transcription	Fetal Kidney	kidney

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