Variant report

Variant	rs2802656
Chromosome Location	chr1:215214182-215214183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1156732	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12061587	1.00[JPT][hapmap]
rs12069528	1.00[JPT][hapmap]
rs12069967	1.00[JPT][hapmap]
rs12097900	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12121815	1.00[JPT][hapmap]
rs1339409	0.82[JPT][hapmap]
rs1377174	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1377176	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1452611	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1452613	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1452614	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1452615	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1452616	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1452617	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1452618	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1452619	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1452621	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1452622	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1538546	0.82[JPT][hapmap]
rs1562993	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1562994	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1597846	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1901622	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1947364	1.00[JPT][hapmap]
rs2167687	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2363553	1.00[JPT][hapmap]
rs2601626	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2601627	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2601628	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2601629	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2601631	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2601632	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2802646	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2802652	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2802653	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2802655	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2841576	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2841578	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2841582	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2841584	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2841585	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2841586	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2841589	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2841590	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2841593	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2841603	0.85[AMR][1000 genomes]
rs4420064	0.95[ASN][1000 genomes]
rs4433363	1.00[JPT][hapmap]
rs55651080	0.85[ASN][1000 genomes]
rs61818261	0.85[ASN][1000 genomes]
rs61819980	0.85[ASN][1000 genomes]
rs61819981	0.85[ASN][1000 genomes]
rs61819982	0.85[ASN][1000 genomes]
rs61820009	0.85[ASN][1000 genomes]
rs61820011	0.85[ASN][1000 genomes]
rs61820013	0.85[ASN][1000 genomes]
rs61820014	0.85[ASN][1000 genomes]
rs61820015	0.85[ASN][1000 genomes]
rs6665177	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7535436	1.00[JPT][hapmap]
rs7551562	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215206800-215216000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:215213200-215214400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:215213200-215214800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:215213600-215214200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:215213800-215214200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:215213800-215214600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:215213800-215216200	Strong transcription	Osteobl	bone
8	chr1:215214000-215214400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr1:215214000-215214400	Strong transcription	NHDF-Ad	bronchial
10	chr1:215214000-215215000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:215214000-215219200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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