Variant report

Variant	rs2806979
Chromosome Location	chr13:53665218-53665219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1361886	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909652	0.86[ASN][1000 genomes]
rs2226192	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2759691	0.86[ASN][1000 genomes]
rs2759696	0.86[ASN][1000 genomes]
rs2759697	0.86[ASN][1000 genomes]
rs2759701	0.86[ASN][1000 genomes]
rs2806989	0.86[ASN][1000 genomes]
rs2806990	0.86[ASN][1000 genomes]
rs2806992	0.86[ASN][1000 genomes]
rs2806997	0.86[ASN][1000 genomes]
rs2806998	0.86[ASN][1000 genomes]
rs34185719	1.00[EUR][1000 genomes]
rs5803629	1.00[EUR][1000 genomes]
rs7336499	0.86[ASN][1000 genomes]
rs74086456	1.00[ASN][1000 genomes]
rs877482	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53658600-53666000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr13:53664200-53665800	Enhancers	Fetal Heart	heart
3	chr13:53664200-53666000	Enhancers	Brain Germinal Matrix	brain
4	chr13:53664600-53667000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr13:53664800-53665800	Weak transcription	Brain Substantia Nigra	brain
6	chr13:53665000-53666800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr13:53665000-53667000	Weak transcription	Brain Angular Gyrus	brain
8	chr13:53665200-53667000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:53665200-53667000	Weak transcription	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links