Variant report

Variant	rs2806998
Chromosome Location	chr13:53710728-53710729
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:53710457..53712289-chr13:53722714..53724707,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1361886	0.86[ASN][1000 genomes]
rs17054846	1.00[EUR][1000 genomes]
rs17054878	1.00[EUR][1000 genomes]
rs17054935	1.00[EUR][1000 genomes]
rs17054941	1.00[EUR][1000 genomes]
rs17055207	0.86[EUR][1000 genomes]
rs17055257	0.86[EUR][1000 genomes]
rs17055503	0.86[EUR][1000 genomes]
rs1885768	0.86[EUR][1000 genomes]
rs1909652	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226192	0.86[ASN][1000 genomes]
rs2759678	1.00[EUR][1000 genomes]
rs2759680	1.00[EUR][1000 genomes]
rs2759681	1.00[EUR][1000 genomes]
rs2759691	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2759696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2759697	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2759701	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2806979	0.86[ASN][1000 genomes]
rs2806989	1.00[ASN][1000 genomes]
rs2806990	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2806992	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2806997	1.00[ASN][1000 genomes]
rs2807007	1.00[EUR][1000 genomes]
rs35422016	0.86[EUR][1000 genomes]
rs7336499	1.00[ASN][1000 genomes]
rs74086456	0.86[ASN][1000 genomes]
rs7984449	1.00[EUR][1000 genomes]
rs7996399	1.00[EUR][1000 genomes]
rs7997868	1.00[EUR][1000 genomes]
rs8001825	1.00[EUR][1000 genomes]
rs877482	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53708800-53715200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr13:53709600-53710800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:53710000-53715600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:53710200-53713000	Enhancers	Fetal Stomach	stomach
5	chr13:53710400-53711200	Enhancers	Stomach Mucosa	stomach
6	chr13:53710400-53711800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:53710600-53711800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr13:53710600-53712800	Enhancers	Primary neutrophils fromperipheralblood	blood

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