Variant report
| Variant | rs2807007 |
|---|---|
| Chromosome Location | chr13:53729815-53729816 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr13:53729767-53730134 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| LINC01065 | TF binding region |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs17054846 | 1.00[EUR][1000 genomes] |
| rs17054878 | 1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs17054935 | 1.00[EUR][1000 genomes] |
| rs17054941 | 1.00[EUR][1000 genomes] |
| rs17055207 | 0.86[EUR][1000 genomes] |
| rs17055257 | 0.86[EUR][1000 genomes] |
| rs17055503 | 0.86[EUR][1000 genomes] |
| rs1885768 | 0.86[EUR][1000 genomes] |
| rs1909652 | 1.00[EUR][1000 genomes] |
| rs2759678 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2759680 | 0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2759681 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2759691 | 1.00[EUR][1000 genomes] |
| rs2759696 | 1.00[EUR][1000 genomes] |
| rs2759697 | 1.00[EUR][1000 genomes] |
| rs2759701 | 1.00[EUR][1000 genomes] |
| rs2806990 | 1.00[EUR][1000 genomes] |
| rs2806992 | 1.00[EUR][1000 genomes] |
| rs2806998 | 1.00[EUR][1000 genomes] |
| rs35422016 | 0.86[EUR][1000 genomes] |
| rs7984449 | 1.00[EUR][1000 genomes] |
| rs7996399 | 1.00[EUR][1000 genomes] |
| rs7997868 | 1.00[EUR][1000 genomes] |
| rs8001825 | 1.00[EUR][1000 genomes] |
| rs877482 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1050969 | chr13:53665927-54064861 | Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:53729600-53730000 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
