Variant report

Variant	rs2807248
Chromosome Location	chr10:25607264-25607265
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25606928..25608702-chr10:25636326..25639003,2	MCF-7	breast:

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10508694	0.86[JPT][hapmap]
rs10741075	0.86[CHB][hapmap];0.85[GIH][hapmap];0.85[ASN][1000 genomes]
rs10741077	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs10764539	0.84[JPT][hapmap]
rs10764543	0.86[JPT][hapmap]
rs10828770	1.00[CHB][hapmap];0.87[GIH][hapmap];0.86[ASN][1000 genomes]
rs10828774	0.81[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap]
rs10828775	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs10828777	0.86[CHB][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap]
rs10828778	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs10828791	0.86[JPT][hapmap]
rs10828792	0.86[JPT][hapmap]
rs10828793	0.85[JPT][hapmap]
rs11014490	0.86[ASN][1000 genomes]
rs11014528	0.86[JPT][hapmap]
rs11014529	0.86[JPT][hapmap]
rs11014530	0.86[JPT][hapmap]
rs11014550	0.86[JPT][hapmap]
rs11014553	0.86[JPT][hapmap]
rs11014554	0.86[JPT][hapmap]
rs1122776	0.86[CHB][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap]
rs1148154	0.83[CEU][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap]
rs11818261	0.86[JPT][hapmap]
rs12240665	0.86[JPT][hapmap]
rs12249852	0.86[JPT][hapmap]
rs12251868	0.86[JPT][hapmap]
rs12251917	0.86[JPT][hapmap]
rs12254479	0.86[JPT][hapmap]
rs12256851	0.85[JPT][hapmap]
rs12258671	0.86[JPT][hapmap]
rs12259043	0.86[JPT][hapmap]
rs12259696	0.86[JPT][hapmap]
rs12358447	0.86[JPT][hapmap]
rs1245966	0.86[ASN][1000 genomes]
rs1245967	0.86[ASN][1000 genomes]
rs12762462	0.86[JPT][hapmap]
rs12773262	0.85[JPT][hapmap]
rs1329259	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs1329263	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1329265	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1340002	0.84[JPT][hapmap]
rs1341963	0.86[JPT][hapmap]
rs1341964	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1341966	0.93[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1410932	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1413397	0.83[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1576317	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1590836	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1591249	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1591250	0.86[CHB][hapmap];0.85[GIH][hapmap]
rs1612200	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1628986	0.83[CEU][hapmap];0.86[CHB][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap]
rs1754251	0.82[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs1754253	0.83[CEU][hapmap];0.86[CHB][hapmap]
rs1754260	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs1754268	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1760716	0.84[CEU][hapmap];0.93[CHB][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1760718	0.84[CEU][hapmap];0.86[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap]
rs1760727	0.86[CHB][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap]
rs1760728	0.86[CHB][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap]
rs1760733	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1760755	0.92[ASN][1000 genomes]
rs1760758	0.93[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs1760759	0.93[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs1760762	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1760763	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1760766	0.83[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1760767	0.83[CEU][hapmap];0.86[CHB][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap]
rs1773608	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1773612	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1773614	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1773616	0.86[CHB][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap]
rs1773617	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1773618	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1773622	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1773623	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1773625	0.83[CEU][hapmap];0.95[GIH][hapmap]
rs1773648	0.92[ASN][1000 genomes]
rs1773649	0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.80[TSI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1773650	1.00[CHB][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs1773651	0.92[ASN][1000 genomes]
rs1773689	0.86[JPT][hapmap]
rs1773690	0.86[JPT][hapmap]
rs1812401	1.00[CHB][hapmap]
rs1855461	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs2262989	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2795044	0.84[CEU][hapmap];0.86[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap]
rs2807245	0.93[ASN][1000 genomes]
rs2807247	0.89[ASN][1000 genomes]
rs2807250	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs2807253	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2807255	0.84[CEU][hapmap];0.86[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap]
rs4351726	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs4423091	0.88[ASN][1000 genomes]
rs4431923	0.83[JPT][hapmap]
rs476972	0.92[ASN][1000 genomes]
rs489052	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs489186	0.93[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs495338	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs495456	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs509285	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap]
rs516071	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs518751	0.90[ASN][1000 genomes]
rs532538	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs541206	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs543850	1.00[CHB][hapmap];0.82[GIH][hapmap]
rs558947	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs573812	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs578033	0.86[ASN][1000 genomes]
rs7079892	0.83[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7094439	0.86[JPT][hapmap]
rs7100128	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7922827	0.91[ASN][1000 genomes]
rs824144	0.86[JPT][hapmap]
rs824145	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs824146	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs824147	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs824590	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs824592	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs824597	0.86[CHB][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap]
rs824598	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs824599	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25607000-25607400	Flanking Active TSS	A549	lung
2	chr10:25607200-25607400	Enhancers	Cortex derived primary cultured neurospheres	brain

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