Variant report

Variant	rs2807865
Chromosome Location	chr1:221067981-221067982
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs2050525	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2484697	0.81[EUR][1000 genomes]
rs2738749	0.85[YRI][hapmap]
rs2738750	0.84[AFR][1000 genomes]
rs2784251	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2784253	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784255	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2784270	0.81[EUR][1000 genomes]
rs2784271	0.92[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2784272	0.92[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2784274	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2807857	0.81[YRI][hapmap]
rs2807859	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2807860	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2807863	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2807864	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2807867	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2807869	0.81[EUR][1000 genomes]
rs867027	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs868058	0.84[YRI][hapmap]
rs945448	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs949839	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs949840	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv1798350	chr1:221020278-221069740	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221066200-221068000	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
2	chr1:221066200-221068000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
3	chr1:221066200-221070000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr1:221066400-221068000	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
5	chr1:221066600-221068200	Active TSS	Right Atrium	heart
6	chr1:221067000-221068000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:221067000-221068000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:221067000-221068000	Bivalent/Poised TSS	NHDF-Ad	bronchial
9	chr1:221067000-221068200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr1:221067000-221068400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
11	chr1:221067000-221068400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
12	chr1:221067200-221068000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:221067200-221068000	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
14	chr1:221067200-221068000	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr1:221067200-221068000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
16	chr1:221067200-221068000	Bivalent/Poised TSS	Aorta	Aorta
17	chr1:221067200-221068000	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
18	chr1:221067200-221068000	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
19	chr1:221067200-221068000	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
20	chr1:221067200-221068000	Bivalent/Poised TSS	Psoas Muscle	Psoas
21	chr1:221067200-221068000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
22	chr1:221067200-221068000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
23	chr1:221067200-221068000	Active TSS	HSMM	muscle
24	chr1:221067200-221068000	Flanking Bivalent TSS/Enh	NH-A	brain
25	chr1:221067200-221068200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
26	chr1:221067200-221068200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
27	chr1:221067200-221068200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr1:221067200-221068200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:221067200-221068200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr1:221067200-221068200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
31	chr1:221067200-221068200	Flanking Active TSS	Pancreas	Pancrea
32	chr1:221067200-221068200	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
33	chr1:221067200-221068400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr1:221067200-221068400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
35	chr1:221067200-221068400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
36	chr1:221067200-221068400	Bivalent/Poised TSS	NHEK	skin
37	chr1:221067400-221068000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr1:221067400-221068000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
39	chr1:221067400-221068000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
40	chr1:221067400-221068000	Flanking Bivalent TSS/Enh	Ovary	ovary
41	chr1:221067400-221068000	Bivalent/Poised TSS	Osteobl	bone
42	chr1:221067400-221068200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr1:221067400-221068200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr1:221067400-221068200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
45	chr1:221067400-221068200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
46	chr1:221067400-221068200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr1:221067400-221068200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
48	chr1:221067400-221068200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
49	chr1:221067400-221068200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
50	chr1:221067400-221068200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle

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