Variant report

Variant	rs2808692
Chromosome Location	chr9:100490372-100490373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100476999..100478674-chr9:100490072..100492132,2	MCF-7	breast:
2	chr9:100483705..100485989-chr9:100486600..100490449,4	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10817988	0.86[ASN][1000 genomes]
rs10983030	0.92[CEU][hapmap]
rs10983447	0.95[EUR][1000 genomes]
rs10983513	0.86[ASN][1000 genomes]
rs10983546	0.84[ASN][1000 genomes]
rs11792527	0.85[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs12375515	0.86[ASN][1000 genomes]
rs12379552	0.90[EUR][1000 genomes]
rs1355599	0.92[ASN][1000 genomes]
rs16923900	0.84[ASN][1000 genomes]
rs1800975	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2026132	0.92[CEU][hapmap]
rs2036959	0.92[CEU][hapmap];0.98[EUR][1000 genomes]
rs2668792	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs2668793	0.98[EUR][1000 genomes]
rs2668798	0.95[EUR][1000 genomes]
rs2773347	0.92[CEU][hapmap]
rs2773351	0.92[CEU][hapmap]
rs2805767	0.92[CEU][hapmap]
rs2805777	0.92[CEU][hapmap]
rs2805779	0.88[CEU][hapmap]
rs2805824	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs2805825	0.99[EUR][1000 genomes]
rs2805826	0.98[EUR][1000 genomes]
rs2805827	0.92[ASN][1000 genomes]
rs2805828	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs2805829	0.92[EUR][1000 genomes]
rs2805832	0.89[EUR][1000 genomes]
rs2805837	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs2805839	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2805840	0.95[EUR][1000 genomes]
rs2808668	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs2808672	0.85[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2808673	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs2808675	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs2808677	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs2808679	0.92[ASN][1000 genomes]
rs2808680	0.92[ASN][1000 genomes]
rs2808683	0.96[EUR][1000 genomes]
rs2808685	0.98[EUR][1000 genomes]
rs2808686	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2808687	0.97[EUR][1000 genomes]
rs2808689	0.99[EUR][1000 genomes]
rs2808691	0.99[EUR][1000 genomes]
rs2808694	0.85[EUR][1000 genomes]
rs2808701	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2808703	0.87[EUR][1000 genomes]
rs7849815	0.84[ASN][1000 genomes]
rs953199	0.85[CHB][hapmap];0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs958346	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100486800-100490600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:100489800-100490800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links