The 2.0 version of rSNPBase

Variant report

Variant rs2811589
Chromosome Location chr1:93367643-93367644
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93363600-93369400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
2 chr1:93364000-93368800 Weak transcription Primary T regulatory cells fromperipheralblood blood
3 chr1:93364000-93373000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr1:93364600-93375200 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr1:93365000-93373800 Weak transcription Primary T cells fromperipheralblood blood
6 chr1:93365800-93374600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr1:93366000-93368800 Weak transcription Fetal Adrenal Gland Adrenal Gland
8 chr1:93366000-93369000 Weak transcription Primary T killer naive cells fromperipheralblood blood
9 chr1:93366200-93369400 Weak transcription Skeletal Muscle Male skeletal muscle
10 chr1:93366400-93368000 Weak transcription Primary T helper cells fromperipheralblood blood
11 chr1:93366400-93368600 Strong transcription Primary B cells from peripheral blood blood
12 chr1:93366400-93369000 Weak transcription Primary T helper naive cells fromperipheralblood blood
13 chr1:93366400-93373800 Weak transcription Liver Liver
14 chr1:93366400-93409200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
15 chr1:93366600-93368000 Genic enhancers Thymus Thymus
16 chr1:93366600-93375000 Weak transcription Brain Angular Gyrus brain
17 chr1:93366800-93368000 Strong transcription Aorta Aorta
18 chr1:93366800-93368400 Strong transcription Dnd41 blood
19 chr1:93366800-93369000 Weak transcription Primary T helper cells PMA-I stimulated --
20 chr1:93366800-93369400 Weak transcription Stomach Smooth Muscle stomach
21 chr1:93367000-93367800 Enhancers Fetal Muscle Trunk muscle
22 chr1:93367000-93367800 Enhancers HSMMtube muscle
23 chr1:93367000-93368200 Strong transcription Breast Myoepithelial Primary Cells Breast
24 chr1:93367000-93368400 ZNF genes & repeats Fetal Stomach stomach
25 chr1:93367000-93390400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr1:93367200-93367800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
27 chr1:93367200-93367800 Enhancers HSMM muscle
28 chr1:93367200-93368000 Enhancers Lung lung
29 chr1:93367200-93368400 Strong transcription Primary B cells from cord blood blood
30 chr1:93367200-93368800 Strong transcription Primary T cells from cord blood blood
31 chr1:93367400-93367800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr1:93367400-93367800 Enhancers Brain Inferior Temporal Lobe brain
33 chr1:93367400-93368000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr1:93367400-93368000 Enhancers Fetal Thymus thymus
35 chr1:93367400-93368000 Weak transcription Pancreas Pancrea
36 chr1:93367400-93369200 Weak transcription Primary T killer memory cells from peripheral blood blood
37 chr1:93367600-93367800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr1:93367600-93367800 Genic enhancers Brain Cingulate Gyrus brain
39 chr1:93367600-93367800 Enhancers Esophagus oesophagus
40 chr1:93367600-93367800 Enhancers Sigmoid Colon Sigmoid Colon
41 chr1:93367600-93368000 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
42 chr1:93367600-93368000 Enhancers HepG2 liver
43 chr1:93367600-93368000 Enhancers K562 blood
44 chr1:93367600-93368200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
45 chr1:93367600-93368400 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
46 chr1:93367600-93368400 ZNF genes & repeats GM12878-XiMat blood
47 chr1:93367600-93368600 Weak transcription Spleen Spleen
48 chr1:93367600-93369200 Weak transcription Fetal Brain Female brain
49 chr1:93367600-93373000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
50 chr1:93367600-93375000 Weak transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015