Variant report

Variant	rs2812098
Chromosome Location	chr14:38673881-38673882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr14:38670042-38674960	H1-hESC	embryonic stem cell:	n/a	n/a
2	FOS	chr14:38673589-38673912	MCF10A-Er-Src	breast:	n/a	chr14:38673758-38673769 chr14:38673760-38673768 chr14:38673619-38673628 chr14:38673760-38673769 chr14:38673759-38673769 chr14:38673758-38673770 chr14:38673761-38673768
3	BRCA1	chr14:38673200-38674685	H1-hESC	embryonic stem cell:	n/a	n/a
4	FOS	chr14:38673548-38673909	MCF10A-Er-Src	breast:	n/a	chr14:38673758-38673769 chr14:38673760-38673768 chr14:38673619-38673628 chr14:38673760-38673769 chr14:38673759-38673769 chr14:38673758-38673770 chr14:38673761-38673768
5	CHD1	chr14:38672845-38674729	H1-hESC	embryonic stem cell:	n/a	n/a
6	FOS	chr14:38673573-38673895	MCF10A-Er-Src	breast:	n/a	chr14:38673758-38673769 chr14:38673760-38673768 chr14:38673619-38673628 chr14:38673760-38673769 chr14:38673759-38673769 chr14:38673758-38673770 chr14:38673761-38673768
7	ATF2	chr14:38669513-38675066	H1-hESC	embryonic stem cell:	n/a	n/a
8	JUND	chr14:38673581-38673926	HepG2	liver:	n/a	chr14:38673760-38673768 chr14:38673619-38673628 chr14:38673760-38673769 chr14:38673759-38673769 chr14:38673758-38673769 chr14:38673758-38673770 chr14:38673761-38673768
9	POLR2A	chr14:38665325-38679673	H1-hESC	embryonic stem cell:	n/a	n/a
10	SP4	chr14:38672790-38674587	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr14:38664557-38679159	H1-hESC	embryonic stem cell:	n/a	n/a
12	ATF2	chr14:38672948-38674300	H1-hESC	embryonic stem cell:	n/a	n/a
13	JUND	chr14:38672917-38674321	H1-hESC	embryonic stem cell:	n/a	chr14:38673760-38673768 chr14:38673619-38673628 chr14:38673514-38673523 chr14:38673760-38673769 chr14:38673759-38673769 chr14:38673758-38673769 chr14:38673758-38673770 chr14:38673761-38673768
14	NRF1	chr14:38672811-38674761	H1-hESC	embryonic stem cell:	n/a	n/a
15	MAFK	chr14:38673158-38674360	H1-hESC	embryonic stem cell:	n/a	chr14:38673761-38673770 chr14:38673323-38673334 chr14:38673323-38673334 chr14:38673324-38673335
16	POLR2A	chr14:38670023-38675096	H1-hESC	embryonic stem cell:	n/a	n/a
17	JUND	chr14:38673545-38674657	Hela-S3	cervix:	n/a	chr14:38673760-38673768 chr14:38673619-38673628 chr14:38673760-38673769 chr14:38673759-38673769 chr14:38673758-38673769 chr14:38673758-38673770 chr14:38673761-38673768
18	FOS	chr14:38673566-38673930	HUVEC	blood vessel:	n/a	chr14:38673758-38673769 chr14:38673760-38673768 chr14:38673619-38673628 chr14:38673760-38673769 chr14:38673759-38673769 chr14:38673758-38673770 chr14:38673761-38673768
19	POLR2A	chr14:38672921-38675037	H1-hESC	embryonic stem cell:	n/a	n/a
20	FOS	chr14:38673643-38673894	MCF10A-Er-Src	breast:	n/a	chr14:38673758-38673769 chr14:38673760-38673768 chr14:38673760-38673769 chr14:38673759-38673769 chr14:38673758-38673770 chr14:38673761-38673768

Variant related genes	Relation type
SSTR1	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2250885	0.88[CHB][hapmap]
rs2803899	0.88[CHB][hapmap]
rs2803939	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv533235	chr14:38558180-39117391	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv832773	chr14:38612778-38785003	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38669000-38674200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr14:38669400-38675600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:38670000-38674200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr14:38670800-38674200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr14:38670800-38676400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr14:38671000-38675200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr14:38672000-38674400	Weak transcription	Stomach Mucosa	stomach
8	chr14:38672800-38676000	Enhancers	Hela-S3	cervix
9	chr14:38673400-38674000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:38673400-38674200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr14:38673400-38674600	Weak transcription	Aorta	Aorta
12	chr14:38673600-38675200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:38673800-38677000	Weak transcription	Right Atrium	heart

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