Variant report

Variant	rs2812250
Chromosome Location	chr13:51313194-51313195
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51309482..51311809-chr13:51312574..51314678,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1323886	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1853558	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1853559	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2492345	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2540523	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2540524	0.82[EUR][1000 genomes]
rs2615123	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2706228	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2706229	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2706234	0.96[ASN][1000 genomes]
rs2706235	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2706239	1.00[ASN][1000 genomes]
rs2706241	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2706242	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2706244	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2706245	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2761840	0.96[ASN][1000 genomes]
rs2761841	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2761842	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2761844	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2761845	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2761846	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2761847	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2761849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761850	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761852	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761853	0.96[ASN][1000 genomes]
rs2761854	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2761855	0.96[ASN][1000 genomes]
rs2812235	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2812238	0.96[ASN][1000 genomes]
rs2812241	0.96[ASN][1000 genomes]
rs2812242	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2812243	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2812244	0.96[ASN][1000 genomes]
rs2812246	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2812247	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2812249	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7328949	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1037350	chr13:51272518-51447354	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51306000-51316800	Weak transcription	HSMM	muscle
2	chr13:51307400-51313600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:51307800-51315000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:51312200-51313200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:51312800-51314600	Enhancers	Cortex derived primary cultured neurospheres	brain

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