Variant report

Variant	rs2813673
Chromosome Location	chr1:216982140-216982141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1339340	0.93[EUR][1000 genomes]
rs1339358	0.81[CHB][hapmap];0.94[GIH][hapmap]
rs1542001	0.81[CHB][hapmap]
rs2576237	0.81[CHB][hapmap]
rs2789719	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2813663	0.88[ASW][hapmap];0.90[JPT][hapmap]
rs2813667	0.87[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2813668	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2813672	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2813675	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6686329	0.81[CHB][hapmap]
rs766158	0.81[CHB][hapmap]
rs766159	0.81[CHB][hapmap];0.94[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216979000-216986200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:216979400-216983000	Weak transcription	Psoas Muscle	Psoas
3	chr1:216979600-216983200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:216979800-216985000	Weak transcription	Fetal Heart	heart
5	chr1:216979800-216985200	Weak transcription	Brain Substantia Nigra	brain
6	chr1:216979800-216988800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr1:216979800-216989000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:216980000-216984800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:216980200-216986400	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:216980200-216987400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:216980400-216988000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr1:216981200-216986000	Weak transcription	HSMMtube	muscle
13	chr1:216982000-216983000	Weak transcription	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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