Variant report

Variant	rs2813703
Chromosome Location	chr1:216913261-216913262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:216906643..216908171-chr1:216912296..216914026,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2789730	0.80[YRI][hapmap]
rs2789734	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2813702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871556	1.00[CEU][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs946473	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs946474	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs946475	1.00[CEU][hapmap];0.92[JPT][hapmap];0.80[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs946476	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs956543	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508694	chr1:216901014-216923883	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2813703	LPGAT1	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216897400-216958600	Weak transcription	Pancreas	Pancrea
2	chr1:216907400-216913400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:216911600-216934200	Weak transcription	Psoas Muscle	Psoas
4	chr1:216912200-216914400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:216912600-216914000	Enhancers	Fetal Heart	heart
6	chr1:216912800-216913400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:216912800-216913800	Enhancers	H9 Cell Line	embryonic stem cell
8	chr1:216912800-216914400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:216913000-216913400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr1:216913000-216913400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:216913000-216913800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr1:216913000-216913800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr1:216913000-216914000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr1:216913000-216914200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr1:216913000-216914400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr1:216913200-216913400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
17	chr1:216913200-216913400	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr1:216913200-216913400	Enhancers	Left Ventricle	heart
19	chr1:216913200-216914000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:216913200-216914200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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