Variant report

Variant	rs2813709
Chromosome Location	chr1:216896444-216896445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs10157018	1.00[AMR][1000 genomes]
rs11572572	1.00[AMR][1000 genomes]
rs11572717	1.00[JPT][hapmap]
rs11572754	1.00[JPT][hapmap]
rs11572785	1.00[JPT][hapmap]
rs13375077	1.00[JPT][hapmap]
rs1339351	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1339353	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1339357	1.00[JPT][hapmap]
rs1361333	1.00[JPT][hapmap]
rs1361334	1.00[JPT][hapmap]
rs1416616	1.00[JPT][hapmap];0.89[YRI][hapmap]
rs1416617	1.00[JPT][hapmap]
rs1538527	1.00[AMR][1000 genomes]
rs1572741	1.00[AMR][1000 genomes]
rs17043116	1.00[JPT][hapmap]
rs1857409	1.00[AMR][1000 genomes]
rs2065805	1.00[AMR][1000 genomes]
rs2153238	1.00[AMR][1000 genomes]
rs2789714	1.00[AMR][1000 genomes]
rs2789715	1.00[AMR][1000 genomes]
rs2789724	1.00[AMR][1000 genomes]
rs2789729	1.00[JPT][hapmap]
rs2813696	1.00[JPT][hapmap]
rs2813697	1.00[JPT][hapmap]
rs2813701	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2813708	1.00[JPT][hapmap]
rs2813710	1.00[AMR][1000 genomes]
rs2820880	1.00[AMR][1000 genomes]
rs6661678	1.00[JPT][hapmap]
rs6693114	1.00[JPT][hapmap]
rs6699811	1.00[JPT][hapmap]
rs6700565	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs946462	1.00[AMR][1000 genomes]
rs946463	1.00[AMR][1000 genomes]

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216891600-216897400	Active TSS	Right Atrium	heart
2	chr1:216893000-216896600	Active TSS	Fetal Stomach	stomach
3	chr1:216893600-216896600	Active TSS	Right Ventricle	heart
4	chr1:216893800-216897800	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr1:216894000-216897400	Active TSS	Left Ventricle	heart
6	chr1:216894000-216897800	Active TSS	Placenta	Placenta
7	chr1:216894200-216897600	Active TSS	Fetal Heart	heart
8	chr1:216894600-216897600	Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr1:216894800-216897400	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr1:216895000-216897400	Active TSS	Skeletal Muscle Female	skeletal muscle
11	chr1:216895200-216896800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:216895200-216896800	Active TSS	Fetal Intestine Large	intestine
13	chr1:216895200-216897400	Active TSS	Gastric	stomach
14	chr1:216895400-216897600	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr1:216895400-216897800	Active TSS	Fetal Intestine Small	intestine
16	chr1:216895600-216897400	Active TSS	Rectal Mucosa Donor 31	rectum
17	chr1:216896000-216897600	Active TSS	Psoas Muscle	Psoas
18	chr1:216896000-216897800	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr1:216896000-216897800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
20	chr1:216896000-216897800	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr1:216896200-216896600	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr1:216896200-216896600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
23	chr1:216896200-216896600	Enhancers	Brain Substantia Nigra	brain
24	chr1:216896200-216896800	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr1:216896200-216897400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:216896200-216897400	Active TSS	H9 Cell Line	embryonic stem cell
27	chr1:216896200-216897400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr1:216896200-216897400	Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr1:216896200-216897400	Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr1:216896200-216897400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:216896200-216897400	Bivalent/Poised TSS	NH-A	brain
32	chr1:216896200-216897600	Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr1:216896200-216897600	Active TSS	H1 Cell Line	embryonic stem cell
34	chr1:216896200-216897600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr1:216896200-216897600	Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr1:216896200-216897600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
37	chr1:216896200-216897600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr1:216896200-216897600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr1:216896200-216897800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr1:216896200-216897800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr1:216896200-216897800	Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr1:216896400-216896600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
43	chr1:216896400-216896600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr1:216896400-216896600	Active TSS	Aorta	Aorta
45	chr1:216896400-216896600	Bivalent Enhancer	Liver	Liver
46	chr1:216896400-216896600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
47	chr1:216896400-216896600	Flanking Active TSS	Ovary	ovary
48	chr1:216896400-216896600	Enhancers	Pancreas	Pancrea
49	chr1:216896400-216896800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
50	chr1:216896400-216896800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain

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