Variant report

Variant	rs2816833
Chromosome Location	chr10:52732308-52732309
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2660210	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2666541	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2666542	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831872	chr10:52663328-52818537	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52731000-52733000	Enhancers	HepG2	liver
2	chr10:52731000-52733800	Enhancers	Stomach Mucosa	stomach
3	chr10:52731000-52734000	Enhancers	Fetal Intestine Small	intestine
4	chr10:52731200-52734600	Enhancers	Fetal Intestine Large	intestine
5	chr10:52731800-52732400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
6	chr10:52731800-52732400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
7	chr10:52732000-52732400	Flanking Active TSS	Duodenum Mucosa	Duodenum
8	chr10:52732000-52732400	Enhancers	Gastric	stomach
9	chr10:52732200-52732400	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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