Variant report

Variant	rs2820529
Chromosome Location	chr1:71134588-71134589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12073510	0.97[ASN][1000 genomes]
rs1334995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap]
rs1932057	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1932061	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2152125	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2263634	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2782762	1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[ASN][1000 genomes]
rs2782763	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2782764	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2782808	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2820532	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2992053	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2992054	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61778683	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871024	chr1:71088106-71169865	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2820529	TNNI3K	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71132000-71134600	Enhancers	Fetal Heart	heart
2	chr1:71132400-71137600	Weak transcription	Fetal Lung	lung
3	chr1:71132800-71136800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:71132800-71141000	Weak transcription	Gastric	stomach
5	chr1:71133400-71136400	Weak transcription	K562	blood
6	chr1:71133800-71137600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:71133800-71138600	Weak transcription	Aorta	Aorta
8	chr1:71134000-71140600	Weak transcription	Pancreas	Pancrea
9	chr1:71134400-71136400	Weak transcription	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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