Variant report

Variant	rs2820541
Chromosome Location	chr1:71228660-71228661
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71223534..71225199-chr1:71228423..71230533,2	K562	blood:
2	chr1:71227725..71229574-chr1:71233307..71236292,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10889891	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10889892	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11209705	0.87[ASN][1000 genomes]
rs11579908	0.87[ASN][1000 genomes]
rs11803673	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11810467	0.87[ASN][1000 genomes]
rs12026456	0.87[ASN][1000 genomes]
rs12040186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12049445	0.87[ASN][1000 genomes]
rs12049500	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1335002	0.98[ASN][1000 genomes]
rs1591386	1.00[ASN][1000 genomes]
rs17131473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1889598	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932050	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2152121	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2152122	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2152123	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2782768	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2782769	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2782770	1.00[ASN][1000 genomes]
rs2782771	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2782772	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2820540	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2820542	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34087524	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34745168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35615554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4320734	0.91[ASN][1000 genomes]
rs55884889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74086786	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74086973	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs915220	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71221800-71230600	Weak transcription	K562	blood
2	chr1:71226600-71230200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:71227000-71229800	Weak transcription	NHDF-Ad	bronchial
4	chr1:71227000-71230800	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links