Variant report
| Variant | rs2820675 |
|---|---|
| Chromosome Location | chr1:215856274-215856275 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10864183 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs11120598 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs11120605 | 0.84[JPT][hapmap] |
| rs11120606 | 0.84[JPT][hapmap] |
| rs11578710 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs12140451 | 0.84[JPT][hapmap] |
| rs12408717 | 0.84[JPT][hapmap] |
| rs1342765 | 0.84[JPT][hapmap] |
| rs2364859 | 0.82[CHB][hapmap];0.90[JPT][hapmap] |
| rs2820691 | 0.92[CEU][hapmap];0.84[JPT][hapmap] |
| rs2820692 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs2820693 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs2820694 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs2820696 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap] |
| rs4372227 | 0.85[JPT][hapmap] |
| rs4375237 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs4655419 | 0.86[CHB][hapmap];0.89[JPT][hapmap] |
| rs7546433 | 0.81[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430324 | chr1:215649163-216082605 | Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv873171 | chr1:215825167-215925167 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv2763680 | chr1:215855883-215870683 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
