Variant report

Variant	rs2820846
Chromosome Location	chr10:52539819-52539820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10821678	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10821698	0.93[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap]
rs10821854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10821859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10994196	0.92[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap]
rs4245009	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4268458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4935178	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs6479701	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7068127	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3326931	chr10:52539746-52541744	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52539800-52540600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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