Variant report

Variant	rs2820881
Chromosome Location	chr1:216880168-216880169
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10863269	1.00[CHB][hapmap]
rs11117646	0.86[CHB][hapmap]
rs11117649	0.84[CHB][hapmap]
rs11117669	1.00[CHB][hapmap]
rs12060770	0.86[CHB][hapmap]
rs12070175	1.00[CHB][hapmap]
rs12402813	1.00[CHB][hapmap]
rs17043436	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17043466	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17043570	1.00[CHB][hapmap]
rs2066108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2789721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2789722	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2813666	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2813670	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2813711	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820882	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2999503	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61817046	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61817047	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7538424	0.85[CHB][hapmap]
rs7543361	0.85[CHB][hapmap]
rs7550534	0.86[CHB][hapmap]
rs946468	0.85[CHB][hapmap]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216868200-216894000	Weak transcription	Placenta	Placenta
2	chr1:216879400-216880800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:216879400-216883200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:216879400-216888400	Weak transcription	Gastric	stomach
5	chr1:216879600-216883400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:216879600-216883400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:216879800-216881800	Weak transcription	Fetal Heart	heart
8	chr1:216880000-216880400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:216880000-216883400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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