Variant report

Variant	rs2822892
Chromosome Location	chr21:16122137-16122138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16121771..16124126-chr21:16124778..16126464,2	K562	blood:
2	chr21:16117024..16119518-chr21:16121656..16124213,2	K562	blood:

Variant related genes	Relation type
ENSG00000232884	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1556282	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1882871	0.84[CHB][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs1882872	0.84[CHB][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs1882873	0.84[CEU][hapmap];0.95[CHB][hapmap];0.97[GIH][hapmap];0.84[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1882874	0.84[CHB][hapmap];0.82[EUR][1000 genomes]
rs2142229	0.82[EUR][1000 genomes]
rs2169079	0.81[ASW][hapmap]
rs2178897	0.82[EUR][1000 genomes]
rs2403805	0.84[CHB][hapmap];0.82[EUR][1000 genomes]
rs2822879	0.81[ASW][hapmap];0.84[LWK][hapmap]
rs2822891	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2822894	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2822895	0.84[CHD][hapmap]
rs2822897	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2822900	0.84[CHB][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs2822902	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2822903	0.84[CHB][hapmap];0.85[EUR][1000 genomes]
rs2822905	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36073527	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56216385	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7275532	0.88[CHB][hapmap]
rs7275790	0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7275823	0.84[CHB][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs7277937	0.95[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7280121	0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs7280294	0.80[CEU][hapmap];0.88[CHB][hapmap];0.85[EUR][1000 genomes]
rs7281062	0.82[EUR][1000 genomes]
rs7282883	0.84[CHB][hapmap]
rs7283943	0.88[CHB][hapmap];0.85[EUR][1000 genomes]
rs8130955	0.84[CHB][hapmap];0.82[EUR][1000 genomes]
rs8133806	0.91[CEU][hapmap];0.95[CHB][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8134576	0.84[CHB][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs954825	0.81[EUR][1000 genomes]
rs954826	0.84[CHB][hapmap]
rs9636594	0.91[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];0.84[JPT][hapmap];0.84[LWK][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9636595	0.88[CHB][hapmap];0.82[EUR][1000 genomes]
rs9636841	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9636842	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9636843	0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs9647058	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9977329	0.84[CEU][hapmap];0.88[CHB][hapmap];0.86[EUR][1000 genomes]
rs9983631	0.85[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16118600-16124000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr21:16120800-16122600	Transcr. at gene 5' and 3'	K562	blood

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