Variant report

Variant	rs283227
Chromosome Location	chr6:101755248-101755249
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1415946	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1475916	1.00[JPT][hapmap]
rs189739	0.85[EUR][1000 genomes]
rs2350100	0.83[CEU][hapmap]
rs2518173	0.83[AFR][1000 genomes]
rs2518174	0.82[AFR][1000 genomes]
rs2518226	1.00[JPT][hapmap]
rs2518228	1.00[JPT][hapmap]
rs2518231	1.00[JPT][hapmap]
rs2518234	1.00[JPT][hapmap]
rs2518235	1.00[JPT][hapmap]
rs2518238	1.00[JPT][hapmap]
rs2518249	1.00[JPT][hapmap]
rs2518319	0.83[AFR][1000 genomes]
rs2518320	0.82[AFR][1000 genomes]
rs2579933	1.00[JPT][hapmap]
rs2579934	1.00[JPT][hapmap]
rs2629982	0.84[AFR][1000 genomes]
rs2629983	0.87[AFR][1000 genomes]
rs2629989	0.81[EUR][1000 genomes]
rs2788276	1.00[JPT][hapmap]
rs283182	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs283188	0.85[EUR][1000 genomes]
rs283211	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs283228	0.85[EUR][1000 genomes]
rs283229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2852501	0.84[ASN][1000 genomes]
rs2852508	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2852532	1.00[JPT][hapmap]
rs3811080	1.00[JPT][hapmap]
rs386552	0.85[EUR][1000 genomes]
rs4103516	0.80[AFR][1000 genomes]
rs439291	0.85[EUR][1000 genomes]
rs485947	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs512464	0.84[ASN][1000 genomes]
rs516735	0.81[EUR][1000 genomes]
rs517552	0.81[EUR][1000 genomes]
rs550690	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs597750	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs606901	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs649828	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs683830	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs705629	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv3367493	chr6:101754831-101758929	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101755000-101755400	Enhancers	Muscle Satellite Cultured Cells	--

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