Variant report
| Variant | rs283229 |
|---|---|
| Chromosome Location | chr6:101754901-101754902 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1415946 | 0.84[ASN][1000 genomes] |
| rs189739 | 0.85[EUR][1000 genomes] |
| rs2518173 | 0.83[AFR][1000 genomes] |
| rs2518174 | 0.82[AFR][1000 genomes] |
| rs2518319 | 0.83[AFR][1000 genomes] |
| rs2518320 | 0.82[AFR][1000 genomes] |
| rs2629982 | 0.84[AFR][1000 genomes] |
| rs2629983 | 0.87[AFR][1000 genomes] |
| rs2629989 | 0.81[EUR][1000 genomes] |
| rs283182 | 0.91[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs283188 | 0.85[EUR][1000 genomes] |
| rs283211 | 0.91[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs283227 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs283228 | 0.85[EUR][1000 genomes] |
| rs2852501 | 0.84[ASN][1000 genomes] |
| rs2852508 | 0.84[ASN][1000 genomes] |
| rs386552 | 0.85[EUR][1000 genomes] |
| rs4103516 | 0.80[AFR][1000 genomes] |
| rs439291 | 0.85[EUR][1000 genomes] |
| rs485947 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs512464 | 0.84[ASN][1000 genomes] |
| rs516735 | 0.81[EUR][1000 genomes] |
| rs517552 | 0.81[EUR][1000 genomes] |
| rs550690 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs597750 | 0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs606901 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs649828 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs683830 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs705629 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020400 | chr6:101172705-101981665 | Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv538390 | chr6:101172705-101981665 | Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 3 | esv3367493 | chr6:101754831-101758929 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:101754800-101755000 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
